[Home] | [Total List]

[177088_at]

Description JC8.7 /REP_DB=WormBase Gene ID /WP=CE17991 /TR=O62291 /GB=CAB05227.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      6grp_total > 76      4grp_total > 23      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 245.6
(3)
P 		127
(-3)
A 		149.9
(-1.8)
A 		195.4
(0.5)
A 		119
B 238.4
(3)
P 		93.5
(-3)
A 		124.7
(-1.7)
A 		146.8
(-0.8)
P 		145
C 201.1
(1.2)
P 		140.7
(-2.9)
A 		139.3
(-3)
A 		227.8
(3)
P 		89
avr 228.4
(3) 		120.4
(-3) 		138
(-2) 		190
(0.9) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 158
(-3)
A 		166.1
(-2.8)
A 		195.8
(-2.2)
P 		267.7
(-0.6)
P 		206.2
(-2)
P 		434.2
(3)
P 		276
B 185.2
(-2.7)
P 		181
(-2.8)
P 		201.4
(-2.1)
P 		193
(-2.4)
P 		176
(-3)
P 		350.3
(3)
P 		174
C 192.2
(-1.4)
P 		143.5
(-3)
M 		194.6
(-1.4)
M 		247.1
(0.3)
P 		227.1
(-0.3)
P 		330.8
(3)
P 		187
avr 178.5
(-2.6) 		163.5
(-3) 		197.3
(-2) 		235.9
(-0.9) 		203.1
(-1.9) 		371.8
(3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 89.4
(3)
P 		27.6
(-3)
A 		39.2
(-1.9)
A 		28.6
(-2.9)
A 		62
B 76
(3)
P 		23.1
(-3)
A 		28.9
(-2.3)
A 		31.3
(-2.1)
P 		53
C 66.6
(3)
P 		40.4
(-2.6)
A 		48.5
(-0.9)
A 		38.4
(-3)
P 		28
avr 77.3
(3) 		30.4
(-3) 		38.9
(-1.9) 		32.8
(-2.7) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 29.1
(-3)
A 		59.1
(-0.7)
A 		42.6
(-1.9)
P 		67.9
(0)
P 		62.2
(-0.4)
P 		105.7
(3)
P 		77
B 64.4
(-1.9)
P 		60.2
(-2.2)
P 		48.9
(-3)
P 		51.1
(-2.8)
P 		71.5
(-1.3)
P 		130.6
(3)
P 		82
C 71.3
(-0.5)
P 		43.8
(-3)
M 		49.5
(-2.5)
M 		49.7
(-2.5)
P 		73.5
(-0.3)
P 		110.8
(3)
P 		67
avr 54.9
(-2.3) 		54.4
(-2.4) 		47
(-3) 		56.2
(-2.2) 		69.1
(-1.1) 		115.7
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8488
Sequence Type Exemplar sequence
Representative Public ID JC8.7 NCBI
Target Description JC8.7 /REP_DB=WormBase Gene ID /WP=CE17991 /TR=O62291 /GB=CAB05227.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070147 NCBI Caenorhabditis elegans JC8.7 (JC8.7) mRNA, complete cds. 11/11 None
SNAP00000009004 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13247245:13250462:1 11/11 None
GENEFINDER00000009018 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13247245:13250462:1 11/11 None
JC8.7 ENSEMBL cdna:known chromosome:CEL140:IV:13247230:13250462:1 gene:JC8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13247250-13250468(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl JC8.7
Entrez Gene 186815 Entrez gene
SwissProt O62291 EMBL-EBI
WormBase CE17991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05227 Hypothetical protein JC8.7 [Caenorhabditis elegans] ref|NP_502548.1| JC8.7 [Caenorhabditis elegans] 0.0
blast CAB05227 Hypothetical protein JC8.7 [Caenorhabditis elegans] ref|NP_502548.1| JC8.7 [Caenorhabditis elegans] 1.0E-173
blast CAE58635 Hypothetical protein CBG01803 [Caenorhabditis briggsae] 1.0E-70
blast CAE58635 Hypothetical protein CBG01803 [Caenorhabditis briggsae] 9.0E-60
blast EAL38941 ENSANGP00000026899 [Anopheles gambiae str. PEST] ref|XP_552678.1| ENSANGP00000026899 [Anopheles gambiae str. PEST] 7.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177088_AT
ttcaaagcttcttcacaccttctaagatttccagtgaagttaaagaagttttgaaacatc
gtgaaaagaccacagttcgtggaatatcaggtcctggaatgctaattgatgtggtcccga
ctggaaattcgggaaagaagaataaaaagaatgagagaactggatatcgcgatttgtcga
aaaatgcttactgtatcaacattgagcaccttgtgagatctctaagactgtgtcaaacta
aagaacaagaagagaaagtgctggattttgtatatggattaatgaacgaaatcaacattt
gcaatgatgaaggtgactttggaaatggcctcgaactcggtcacattctatttttggcaa
atatgaaagcggtagccgacccaatgatgataactcttcacatagcctacaagaatctcc
atcgtcccgatttcgcgaaaatactcgatctcacactcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAAGCTTCTTCACACCTTCTAA 85 687 524 Antisense
GCTAATTGATGTGGTCCCGACTGGA 639 301 624 Antisense
GAGAACTGGATATCGCGATTTGTCG 617 391 678 Antisense
GAGCACCTTGTGAGATCTCTAAGAC 210 389 727 Antisense
TTGGAAATGGCCTCGAACTCGGTCA 708 657 842 Antisense
AACTCGGTCACATTCTATTTTTGGC 514 139 857 Antisense
AAAGCGGTAGCCGACCCAATGATGA 639 123 889 Antisense
GATGATAACTCTTCACATAGCCTAC 376 411 909 Antisense
CATAGCCTACAAGAATCTCCATCGT 134 215 924 Antisense
TCCATCGTCCCGATTTCGCGAAAAT 635 589 941 Antisense
CGAAAATACTCGATCTCACACTCAG 55 253 959 Antisense
Sequence Source Affymetrix Proprietary Database