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[177087_at]

Description Y19D10B.F /REP_DB=WormBase Gene ID /WP=CE26052 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59429.1
Cluster 6grp_total > 26      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 53.7
(-1.3)
A 		20.2
(-3)
A 		29.8
(-2.5)
A 		136
(3)
P 		116
B 3
(-3)
A 		58.1
(3)
A 		31.2
(0.1)
A 		51.3
(2.3)
A 		55
C 34.7
(-1)
A 		51.8
(0.1)
A 		6
(-3)
A 		93.8
(3)
P 		88
avr 30.5
(-2.3) 		43.4
(-1.2) 		22.3
(-3) 		93.7
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 39.6
(2.1)
A 		46.5
(3)
A 		28.8
(0.6)
A 		41.2
(2.3)
A 		2.9
(-3)
A 		5.3
(-2.7)
A 		44
B 52.7
(3)
A 		32.8
(0.5)
A 		11.5
(-2.2)
A 		4.8
(-3)
A 		48.9
(2.5)
A 		44.3
(1.9)
A 		48
C 33.5
(-0)
A 		63.9
(3)
A 		44.1
(1)
A 		3.3
(-3)
A 		50.5
(1.7)
A 		46
(1.2)
A 		61
avr 41.9
(1.9) 		47.7
(3) 		28.1
(-0.8) 		16.4
(-3) 		34.1
(0.4) 		31.9
(-0) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.6
(2.9)
A 		4.4
(-3)
A 		7.8
(-1.7)
A 		19.9
(3)
P 		16
B 0.9
(-3)
A 		14.4
(3)
A 		7.2
(-0.2)
A 		10.9
(1.4)
A 		14
C 11.5
(1.1)
A 		14.9
(2.6)
A 		2.1
(-3)
A 		15.8
(3)
P 		14
avr 10.7
(0.1) 		11.2
(0.4) 		5.7
(-3) 		15.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.3
(-0.5)
A 		16.5
(3)
A 		6.3
(-0.9)
A 		10.4
(0.7)
A 		0.9
(-3)
A 		1.3
(-2.8)
A 		16
B 18.3
(2.5)
A 		10.9
(0.1)
A 		2.8
(-2.5)
A 		1.3
(-3)
A 		19.9
(3)
A 		16.5
(1.9)
A 		19
C 12.4
(0.7)
A 		19.5
(3)
A 		11.2
(0.4)
A 		0.7
(-3)
A 		16.3
(2)
A 		15.4
(1.7)
A 		19
avr 12.7
(1.5) 		15.6
(3) 		6.8
(-1.6) 		4.1
(-3) 		12.4
(1.3) 		11.1
(0.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19483
Sequence Type Exemplar sequence
Representative Public ID Y19D10B.F NCBI
Target Description Y19D10B.F /REP_DB=WormBase Gene ID /WP=CE26052 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59429.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071230(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071230 NCBI Caenorhabditis elegans Y19D10B.2 (Y19D10B.2) mRNA, complete cds. 10/11 None
GENEFINDER00000024003 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2298950:2303696:-1 10/11 None
Y19D10B.2 ENSEMBL cdna:known chromosome:CEL140:V:2299824:2303002:-1 gene:Y19D10B.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023992 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2299380-2303002(-) 96.39 100.0
Public Domain and Genome References
Gene Title
Ensembl Y19D10B.2
Entrez Gene 189493 Entrez gene
SwissProt Q9N571 EMBL-EBI
WormBase CE25229 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59429 Hypothetical protein Y19D10B.2 [Caenorhabditis elegans] ref|NP_503631.2| Y19D10B.2 [Caenorhabditis elegans] 0.0
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 1.0E-123
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 1.0E-108
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 7.0E-75
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 1.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.0E-14
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.0E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.6E-7
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.9E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.1E-17
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.0E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.6E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024003 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:177087_AT
ggaagtcttactgtgatggataccaaattcaaaagcatcagttttttggcaggattggaa
gcagttgaatgtggccaatactccatcgtgctagatttcaacaatcaaatgatcgaattt
ggtctcaccaatttgacttctatctcttgctcgaatttcgaaattattggttataagaaa
ttgcgcaatttaggatttcccaatttaaaaagcataacactggatgaattttccagtcct
ttcgatgaatttgtgagactctacattgatccagactccatcgatttctgcatcaccgtt
gaggaaatggaaacccttatctcagcggaagatgttaacgttgatgggatttatgggaaa
tattgcactccgacaacatctgaaaatctatgcacatttcctgaaatttgcccaaaaata
tttggtgacgtggaagttggatcaagctcaagcatagactccctgaagtttatggaaata
atattcggaagtcttattatcaatggaaccaacctgacaaattttaattttctagaaaat
ttgaaatacgtggcacagctgactagttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTCTTACTGTGATGGATACCA 101 533 1009 Antisense
GAATGTGGCCAATACTCCATCGTGC 108 333 1075 Antisense
ACTCCATCGTGCTAGATTTCAACAA 469 99 1088 Antisense
TGACTTCTATCTCTTGCTCGAATTT 374 571 1142 Antisense
GGATGAATTTTCCAGTCCTTTCGAT 660 513 1230 Antisense
GACTCTACATTGATCCAGACTCCAT 189 373 1265 Antisense
CAGACTCCATCGATTTCTGCATCAC 662 205 1280 Antisense
AATGGAAACCCTTATCTCAGCGGAA 111 161 1314 Antisense
AATATTGCACTCCGACAACATCTGA 410 173 1367 Antisense
CAAGCTCAAGCATAGACTCCCTGAA 357 185 1451 Antisense
TACGTGGCACAGCTGACTAGTTCTT 158 649 1555 Antisense
Sequence Source Affymetrix Proprietary Database