[Home] | [Total List]

[177086_at]

Description M79.3 /REP_DB=WormBase Gene ID /WP=CE03508 /TR=Q21598 /GB=CAA90689.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 93      6grp_total > 66      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 727.3
(3)
P 		370.5
(-3)
P 		434.3
(-1.9)
P 		482.8
(-1.1)
P 		357
B 724.8
(3)
P 		426
(-2.2)
P 		383
(-3)
P 		695.8
(2.5)
P 		342
C 803.6
(3)
P 		402.6
(-3)
P 		432.7
(-2.5)
P 		566.8
(-0.5)
P 		401
avr 751.9
(3) 		399.7
(-3) 		416.7
(-2.7) 		581.8
(0.1) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 504
1 2 3 4 5 6 range
A 346.6
(-2.7)
P 		324.7
(-3)
P 		442.9
(-1.3)
P 		534.8
(0)
P 		376.4
(-2.3)
P 		740.1
(3)
P 		415
B 439.2
(-2)
P 		394.2
(-2.6)
P 		493.9
(-1.2)
P 		441.3
(-1.9)
P 		368.5
(-3)
P 		780.1
(3)
P 		412
C 385.8
(-2.1)
P 		376.7
(-2.2)
P 		341.7
(-2.6)
P 		484.8
(-0.9)
P 		306.8
(-3)
P 		810.9
(3)
P 		504
avr 390.5
(-2.4) 		365.2
(-2.8) 		426.2
(-1.9) 		487
(-1.1) 		350.6
(-3) 		777
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 264.8
(3)
P 		80.4
(-2.7)
P 		113.5
(-1.7)
P 		70.7
(-3)
P 		194
B 231.1
(3)
P 		105.2
(-2.3)
P 		88.7
(-3)
P 		148.3
(-0.5)
P 		142
C 266
(3)
P 		115.8
(-2.3)
P 		150.8
(-1.1)
P 		95.6
(-3)
P 		170
avr 254
(3) 		100.5
(-3) 		117.7
(-2.3) 		104.9
(-2.8) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 63.9
(-3)
P 		115.5
(-0.3)
P 		96.4
(-1.3)
P 		135.6
(0.7)
P 		113.6
(-0.4)
P 		180.2
(3)
P 		116
B 152.8
(-1.8)
P 		131.2
(-2.5)
P 		119.9
(-2.9)
P 		116.9
(-3)
P 		149.7
(-1.9)
P 		290.9
(3)
P 		174
C 143
(-1.2)
P 		114.9
(-2.1)
P 		87
(-3)
P 		97.5
(-2.7)
P 		99.3
(-2.6)
P 		271.5
(3)
P 		185
avr 119.9
(-2.2) 		120.5
(-2.2) 		101.1
(-3) 		116.7
(-2.4) 		120.9
(-2.2) 		247.5
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17141
Sequence Type Exemplar sequence
Representative Public ID M79.3 NCBI
Target Description M79.3 /REP_DB=WormBase Gene ID /WP=CE03508 /TR=Q21598 /GB=CAA90689.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077379 NCBI Caenorhabditis elegans M79.3 (M79.3) mRNA, complete cds. 11/11 None
SNAP00000006252 ENSEMBL cdna:SNAP chromosome:CEL140:X:10626530:10627986:-1 11/11 None
M79.3 ENSEMBL cdna:known chromosome:CEL140:X:10626487:10627486:-1 gene:M79.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10626529-10627486(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M79.3
Entrez Gene 181262 Entrez gene
SwissProt Q21598 EMBL-EBI
WormBase CE03508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90689 Hypothetical protein M79.3 [Caenorhabditis elegans] ref|NP_509780.1| M79.3 [Caenorhabditis elegans] 5.0E-83
blast CAA90689 Hypothetical protein M79.3 [Caenorhabditis elegans] ref|NP_509780.1| M79.3 [Caenorhabditis elegans] 2.0E-82
blast CAE60810 Hypothetical protein CBG04509 [Caenorhabditis briggsae] 3.0E-64
blast CAE60810 Hypothetical protein CBG04509 [Caenorhabditis briggsae] 9.0E-64
blast CAA90720 Hypothetical protein M79.2 [Caenorhabditis elegans] emb|CAA90692.1| Hypothetical protein M79.2 [Caenorhabditis elegans] ref|NP_509781.1| M79.2 [Caenorhabditis elegans] 2.0E-55
blast CAE60799 Hypothetical protein CBG04491 [Caenorhabditis briggsae] 7.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 4.0E-6
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 7.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000006252 2 5-24,34-53
Sequence
Target Sequence 
>C. ELEGANS:177086_AT
gaaggaccagtgttactatttccggaaggatattgttcaaacaacagcaaggtgctgcaa
ttcagaaaagctatttttgaagaaaatgtcaatatctatccagttgcaattaagcaatcc
ccagagtttggagatggcttttggtatgaagacgaatttttccaatacttagttcgaatt
atgcttaactgggcagttgtctatgacattcaatatcttcctatggaagtacgaaaagaa
catgaaaataattctctgtttgctgctagaattcagcaagtcattgcgaatgcagccgga
attccatcatgtgaatatggaggaagtctctggtataaacaagaagaaaggaataaactg
aaggaaaccctcaaaactcagcatgatatttctggaagcagaaataatagtgatagtggg
atatctggtggaggaggaagcagtgataatttgagcatcgacgatttcgaatctgtttcg
gagaaccagtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGACCAGTGTTACTATTTCCGG 641 333 31 Antisense
TGTCAATATCTATCCAGTTGCAATT 92 559 117 Antisense
GCAATTAAGCAATCCCCAGAGTTTG 248 321 136 Antisense
TAACTGGGCAGTTGTCTATGACATT 703 637 216 Antisense
ATGACATTCAATATCTTCCTATGGA 182 45 233 Antisense
AAAATAATTCTCTGTTTGCTGCTAG 274 131 275 Antisense
GCAAGTCATTGCGAATGCAGCCGGA 640 321 306 Antisense
ATGCAGCCGGAATTCCATCATGTGA 651 43 320 Antisense
GAAGGAAACCCTCAAAACTCAGCAT 657 329 390 Antisense
GAGCATCGACGATTTCGAATCTGTT 187 389 483 Antisense
CGAATCTGTTTCGGAGAACCAGTGT 110 255 498 Antisense
Sequence Source Affymetrix Proprietary Database