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[177084_at]

Description M79.2 /REP_DB=WormBase Gene ID /WP=CE03507 /TR=Q19334 /GB=CAA90692.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 82      6grp_total > 75      4grp_total > 39      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 699.8
(3)
P 		382.4
(-1.7)
P 		294
(-3)
P 		494.1
(-0)
P 		406
B 689.1
(3)
P 		436.3
(-1.3)
P 		333.8
(-3)
P 		398
(-1.9)
P 		355
C 724.6
(3)
P 		417.9
(-3)
P 		430
(-2.8)
P 		493.4
(-1.5)
P 		307
avr 704.5
(3) 		412.2
(-2) 		352.6
(-3) 		461.8
(-1.1) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 364.5
(-0.1)
P 		338.3
(-0.7)
P 		387.3
(0.3)
P 		509.7
(3)
P 		231.4
(-3)
P 		511
(3)
P 		280
B 327.1
(-1.5)
P 		257.6
(-3)
P 		291.9
(-2.3)
P 		473.6
(1.7)
P 		311.7
(-1.8)
P 		535.6
(3)
P 		278
C 325.5
(-0.6)
P 		296.5
(-1.2)
P 		436.6
(1.7)
P 		466.7
(2.3)
P 		207.2
(-3)
P 		502.4
(3)
P 		295
avr 339
(-1) 		297.5
(-1.9) 		371.9
(-0.3) 		483.3
(2.3) 		250.1
(-3) 		516.3
(3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 254.8
(3)
P 		83
(-2.6)
P 		76.8
(-2.9)
P 		72.3
(-3)
P 		183
B 219.7
(3)
P 		107.8
(-1.7)
P 		77.4
(-3)
P 		84.8
(-2.7)
P 		142
C 239.9
(3)
P 		120.1
(-1.6)
P 		149.9
(-0.4)
P 		83.2
(-3)
P 		157
avr 238.1
(3) 		103.6
(-2.1) 		101.4
(-2.2) 		80.1
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 67.2
(-3)
P 		120.3
(2.1)
P 		84.3
(-1.3)
P 		129.3
(3)
P 		69.8
(-2.7)
P 		124.4
(2.5)
P 		62
B 113.8
(-1)
P 		85.7
(-2.3)
P 		70.9
(-3)
P 		125.4
(-0.5)
P 		126.6
(-0.4)
P 		199.7
(3)
P 		129
C 120.6
(0.2)
P 		90.5
(-1.6)
P 		111.1
(-0.4)
P 		93.9
(-1.4)
P 		67.1
(-3)
P 		168.2
(3)
P 		101
avr 100.5
(-2) 		98.8
(-2.1) 		88.8
(-2.9) 		116.2
(-0.8) 		87.8
(-3) 		164.1
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17273
Sequence Type Exemplar sequence
Representative Public ID M79.2 NCBI
Target Description M79.2 /REP_DB=WormBase Gene ID /WP=CE03507 /TR=Q19334 /GB=CAA90692.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077380 NCBI Caenorhabditis elegans M79.2 (M79.2) mRNA, complete cds. 11/11 None
M79.2 ENSEMBL cdna:known chromosome:CEL140:X:10627595:10628914:-1 gene:M79.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006252 7/11 Cross Hyb Matching Probes None
SNAP00000033794 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033801 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10627594-10628914(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M79.2
Entrez Gene 187470 Entrez gene
SwissProt Q19334 EMBL-EBI
WormBase CE03507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90720 Hypothetical protein M79.2 [Caenorhabditis elegans] emb|CAA90692.1| Hypothetical protein M79.2 [Caenorhabditis elegans] ref|NP_509781.1| M79.2 [Caenorhabditis elegans] 1.0E-142
blast CAE60811 Hypothetical protein CBG04511 [Caenorhabditis briggsae] 1.0E-99
blast CAE60799 Hypothetical protein CBG04491 [Caenorhabditis briggsae] 2.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509781.1 4 21-40,55-75,168-190,205-224
M79.2 4 21-40,55-75,168-190,205-224
Sequence
Target Sequence 
>C. ELEGANS:177084_AT
aatggtatcttcacgtggttgcaatgattcaaggatatttcccacgagaaaaacttgaaa
acacatatgagaatgaagagagtgaagaacaaaggagtgaaaaatcggcagatcaaattg
ctgaagaacgagtgaagaggataattgatactgatcttggaccatgctttcaaacagctc
ctacgatacggcctactctattaggcatgatgcctgagaagaattggaattcaacagaga
aggcaattttctttgccggattaatttttagaatatttttccttatgcctgtgcgagttt
gtctactcctcacatcatttgtttttgttgcacttgctggacttcaaaccgcattccgaa
cactatcggatcgtgaaaaaacatgggttgctatcgtatactgtcgattgttttgtggta
gtatgggactagttgccaactacagaaacccacaattcagacccaagaaaccaggagttg
cagtttcgaatcatttaaccccaaatgatattcaaattttatgggctggaacaccacacg
gaagctcatatggatacgttgtcactggccaaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTATCTTCACGTGGTTGCAAT 436 163 242 Antisense
TTGATACTGATCTTGGACCATGCTT 280 705 386 Antisense
GACCATGCTTTCAAACAGCTCCTAC 701 383 401 Antisense
TTATGCCTGTGCGAGTTTGTCTACT 459 679 524 Antisense
TCTACTCCTCACATCATTTGTTTTT 87 615 543 Antisense
GTTTTTGTTGCACTTGCTGGACTTC 334 449 562 Antisense
TCAAACCGCATTCCGAACACTATCG 267 629 585 Antisense
CATGGGTTGCTATCGTATACTGTCG 705 209 623 Antisense
GAAACCCACAATTCAGACCCAAGAA 24 359 686 Antisense
CTGGAACACCACACGGAAGCTCATA 128 241 767 Antisense
GGATACGTTGTCACTGGCCAAAAAC 633 505 793 Antisense
Sequence Source Affymetrix Proprietary Database