[Home] | [Total List]

[177083_at]

Description Y55F3BR.D /REP_DB=WormBase Gene ID /WP=CE22537 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59602.1
Cluster 6grp_total > 53      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.6
(-3)
A 		3.6
(1.3)
A 		1.8
(-2.6)
A 		4.4
(3)
A 		3
B 5
(3)
A 		1.5
(-3)
A 		1.6
(-2.8)
A 		3.4
(0.3)
A 		4
C 1.9
(-2.5)
A 		1.6
(-3)
A 		2.2
(-2)
A 		5.1
(3)
A 		4
avr 2.8
(-0.8) 		2.2
(-2.3) 		1.9
(-3) 		4.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4
(3)
A 		1.2
(-3)
A 		1.7
(-1.9)
A 		2
(-1.3)
A 		3.2
(1.3)
A 		2.1
(-1.1)
A 		3
B 1.5
(-3)
A 		1.5
(-3)
A 		2.4
(3)
A 		2.4
(3)
A 		2.1
(1)
A 		1.5
(-3)
A 		1
C 1.7
(-3)
A 		4.6
(-0.1)
A 		7.7
(3)
A 		1.9
(-2.8)
A 		4.9
(0.2)
A 		2.3
(-2.4)
A 		6
avr 2.4
(-1.7) 		2.4
(-1.7) 		3.9
(3) 		2.1
(-2.7) 		3.4
(1.4) 		2
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-1)
A 		0.8
(3)
A 		0.5
(-3)
A 		0.6
(-1)
A 		0
B 1.6
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.7
(-1.5)
A 		1
C 0.6
(-1.5)
A 		0.5
(-3)
A 		0.8
(1.5)
A 		0.9
(3)
A 		0
avr 0.9
(3) 		0.6
(-3) 		0.6
(-3) 		0.7
(-1) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.7
(-0)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.5
(-2)
A 		1
(3)
A 		0.5
(-2)
A 		1
B 0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-1.5)
A 		0.6
(-1.5)
A 		0.9
(3)
A 		0.6
(-1.5)
A 		0
C 0.6
(-2.2)
A 		1.4
(1)
A 		1.9
(3)
A 		0.4
(-3)
A 		1.6
(1.8)
A 		0.8
(-1.4)
A 		2
avr 0.6
(-2.1) 		0.8
(-0.4) 		1
(1.3) 		0.5
(-3) 		1.2
(3) 		0.6
(-2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19236
Sequence Type Exemplar sequence
Representative Public ID Y55F3BR.D NCBI
Target Description Y55F3BR.D /REP_DB=WormBase Gene ID /WP=CE22537 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59602.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y55F3BR.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y55F3BR.D Y55F3BR.D /REP_DB=WormBase Gene ID /WP=CE22537 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59602.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067599 11/11 Negative Strand Matching Probes A B 
SNAP00000039567 11/11 Negative Strand Matching Probes None
GENEFINDER00000039579 11/11 Negative Strand Matching Probes None
Y55F3BR.4 11/11 Negative Strand Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:846366-846731(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177083_AT
atggcttctcaagtcgtgaaactgtgctacagtaagcgtctcgtcaccctccgggcccac
ggacagcgtgcacgtgaagctctcgaacgggtacttccaggcgcggtgcaaagactagag
acggatgccaaggcgggtattctgacggcattgagaatcgatcttggagctcgcggagcc
gcagacgctcgtctatccaggtcatcactattatcacctcgaggtagaggtttctctgga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTTCTCAAGTCGTGAAACTGT 594 51 13 Antisense
GTGCTACAGTAAGCGTCTCGTCACC 702 479 36 Antisense
ACGGACAGCGTGCACGTGAAGCTCT 1 97 71 Antisense
GAAGCTCTCGAACGGGTACTTCCAG 181 341 88 Antisense
CTTCCAGGCGCGGTGCAAAGACTAG 360 209 106 Antisense
GACTAGAGACGGATGCCAAGGCGGG 348 357 125 Antisense
CCAAGGCGGGTATTCTGACGGCATT 380 277 140 Antisense
GAGAATCGATCTTGGAGCTCGCGGA 287 391 165 Antisense
CTCGTCTATCCAGGTCATCACTATT 168 233 200 Antisense
GTCATCACTATTATCACCTCGAGGT 320 467 213 Antisense
CCTCGAGGTAGAGGTTTCTCTGGAA 309 267 229 Antisense
Sequence Source Affymetrix Proprietary Database