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[177082_at]

Description M79.4 /REP_DB=WormBase Gene ID /WP=CE18890 /TR=Q9XVX1 /GB=CAA90690.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 57      6grp_total > 22      4grp_total > 13      6grp_highest_sub > 02      6grp_cgc > 61      6grp_high1_sub > 02      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4098
1 2 3 4 range
A 3463.3
(1.3)
P 		1583
(-2.3)
P 		1244.4
(-3)
P 		4316.2
(3)
P 		3072
B 3164.2
(-0.2)
P 		1842.1
(-2.2)
P 		1292
(-3)
P 		5342.3
(3)
P 		4050
C 3269.8
(0.6)
P 		1835.9
(-2)
P 		1312.8
(-3)
P 		4557.5
(3)
P 		3245
avr 3299.1
(0.5) 		1753.7
(-2.2) 		1283.1
(-3) 		4738.7
(3) 		3456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1471
1 2 3 4 5 6 range
A 2252.4
(0.5)
P 		2382.2
(1.2)
P 		2704.3
(3)
P 		2361.6
(1.1)
P 		2204.3
(0.2)
P 		1634.7
(-3)
P 		1070
B 2976.8
(2.3)
P 		3106
(3)
P 		2848.2
(1.5)
P 		2723.3
(0.8)
P 		2261.3
(-1.9)
P 		2066
(-3)
P 		1040
C 2548.9
(0.3)
P 		2969.6
(3)
P 		2179.7
(-2.1)
P 		2738.1
(1.5)
P 		2035.2
(-3)
P 		2093.3
(-2.6)
P 		934
avr 2592.7
(1.5) 		2819.3
(3) 		2577.4
(1.4) 		2607.7
(1.6) 		2166.9
(-1.4) 		1931.3
(-3) 		888
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 962
1 2 3 4 range
A 1261
(3)
P 		343.6
(-2.9)
P 		325.3
(-3)
P 		631.8
(-1)
P 		936
B 1009.1
(2.1)
P 		455
(-1.9)
P 		299.4
(-3)
P 		1138.4
(3)
P 		839
C 1082.4
(3)
P 		527.8
(-2.3)
P 		457.6
(-3)
P 		768.5
(-0)
P 		625
avr 1117.5
(3) 		442.1
(-2.4) 		360.8
(-3) 		846.2
(0.8) 		757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 638
1 2 3 4 5 6 range
A 415.2
(-2.8)
P 		847.2
(3)
P 		588.9
(-0.5)
P 		599
(-0.3)
P 		665.2
(0.6)
P 		398
(-3)
P 		449
B 1035.8
(3)
P 		1033.8
(3)
P 		691.6
(-3)
P 		721.3
(-2.5)
P 		918.7
(1)
P 		770.4
(-1.6)
P 		344
C 944.7
(3)
P 		906.1
(2.4)
P 		554.8
(-2.9)
P 		550.6
(-3)
P 		658.6
(-1.4)
P 		700.7
(-0.7)
P 		394
avr 798.6
(0.5) 		929
(3) 		611.8
(-3) 		623.6
(-2.8) 		747.5
(-0.4) 		623
(-2.8) 		317
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177082_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16885
Sequence Type Exemplar sequence
Representative Public ID M79.4 NCBI
Target Description M79.4 /REP_DB=WormBase Gene ID /WP=CE18890 /TR=Q9XVX1 /GB=CAA90690.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077375 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-19) (flp-19) mRNA, complete cds. 11/11 None
SNAP00000006248 ENSEMBL cdna:SNAP chromosome:CEL140:X:10604751:10605159:1 10/11 None
M79.4 ENSEMBL cdna:known chromosome:CEL140:X:10604736:10605950:1 gene:M79.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10604750-10605496(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-19
Ensembl M79.4
Entrez Gene 181260 Entrez gene
SwissProt Q9XVX1 EMBL-EBI
WormBase CE18890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90690 Hypothetical protein M79.4 [Caenorhabditis elegans] ref|NP_509776.1| FMRF-Like Peptide family member (flp-19) [Caenorhabditis elegans] 3.0E-44
blast CAE60808 Hypothetical protein CBG04506 [Caenorhabditis briggsae] 7.0E-38
blast CAA90690 Hypothetical protein M79.4 [Caenorhabditis elegans] ref|NP_509776.1| FMRF-Like Peptide family member (flp-19) [Caenorhabditis elegans] 6.0E-25
blast CAE60808 Hypothetical protein CBG04506 [Caenorhabditis briggsae] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:177082_AT
tgtccttccagctaacgctgttttccatgcttttcctgttaattgccgtagtcgtcgggc
aaccaattcagtcacaaaatggtgatttgaaaatgcaagccgttcaggacaactcaccgt
tgaatatggaggcgttcaacgacgattcggcattgtacgactatcttgagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCTTCCAGCTAACGCTGTTTTC 132 557 14 Antisense
AGCTAACGCTGTTTTCCATGCTTTT 359 79 23 Antisense
ATGCTTTTCCTGTTAATTGCCGTAG 645 41 40 Antisense
AATTGCCGTAGTCGTCGGGCAACCA 564 165 54 Antisense
TCGTCGGGCAACCAATTCAGTCACA 488 603 65 Antisense
ATGCAAGCCGTTCAGGACAACTCAC 655 43 106 Antisense
CCGTTCAGGACAACTCACCGTTGAA 93 265 113 Antisense
CTCACCGTTGAATATGGAGGCGTTC 353 225 126 Antisense
GAGGCGTTCAACGACGATTCGGCAT 205 405 142 Antisense
GACGATTCGGCATTGTACGACTATC 574 377 154 Antisense
GGCATTGTACGACTATCTTGAGCAG 579 537 162 Antisense
Sequence Source Affymetrix Proprietary Database