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[177080_at]

Description M18.8 /REP_DB=WormBase Gene ID /WP=CE12430 /TR=O17549 /GB=CAA92831.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 95      6grp_total > 75      4grp_total > 21      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 607.3
(1.7)
P 		656.9
(3)
P 		431.9
(-3)
P 		646.7
(2.7)
P 		225
B 649
(3)
P 		500.4
(-3)
P 		542.7
(-1.3)
P 		624.1
(2)
P 		149
C 513.9
(-1.1)
P 		458
(-3)
P 		536.6
(-0.3)
P 		635
(3)
P 		177
avr 590.1
(0.9) 		538.4
(-1.4) 		503.7
(-3) 		635.3
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 528.6
(-2.9)
P 		521.5
(-3)
P 		737.7
(0.6)
P 		741
(0.6)
P 		679.6
(-0.4)
P 		884.3
(3)
P 		363
B 545.2
(-2.4)
P 		503.4
(-3)
P 		754.7
(0.7)
P 		631.6
(-1.1)
P 		784.9
(1.2)
P 		909.9
(3)
P 		407
C 402.7
(-3)
P 		528
(-1.9)
P 		564.3
(-1.6)
P 		844.6
(0.9)
P 		701.6
(-0.4)
P 		1084.7
(3)
P 		682
avr 492.2
(-3) 		517.6
(-2.7) 		685.6
(-0.5) 		739.1
(0.2) 		722
(-0.1) 		959.6
(3) 		467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 221.1
(3)
P 		142.6
(-0.7)
P 		112.9
(-2.1)
P 		94.7
(-3)
P 		126
B 207
(3)
P 		123.6
(-3)
P 		125.7
(-2.8)
P 		133
(-2.3)
P 		83
C 170.1
(1.7)
P 		131.7
(-1.2)
P 		187
(3)
P 		107.1
(-3)
P 		80
avr 199.4
(3) 		132.6
(-1.6) 		141.9
(-0.9) 		111.6
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 97.5
(-3)
P 		185.5
(1.5)
P 		160.7
(0.2)
P 		187.9
(1.6)
P 		205.1
(2.5)
P 		215.3
(3)
P 		118
B 189.7
(-2.2)
P 		167.6
(-3)
P 		183.3
(-2.4)
P 		167.3
(-3)
P 		318.9
(2.3)
P 		339.3
(3)
P 		172
C 149.3
(-2.8)
P 		161.1
(-2.5)
P 		143.6
(-3)
P 		169.8
(-2.3)
P 		227
(-0.7)
P 		363.1
(3)
P 		220
avr 145.5
(-3) 		171.4
(-2) 		162.5
(-2.4) 		175
(-1.9) 		250.3
(0.9) 		305.9
(3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8776
Sequence Type Exemplar sequence
Representative Public ID M18.8 NCBI
Target Description M18.8 /REP_DB=WormBase Gene ID /WP=CE12430 /TR=O17549 /GB=CAA92831.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069901(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069901 NCBI Caenorhabditis elegans M18.8 (M18.8) mRNA, complete cds. 10/11 None
M18.8 ENSEMBL cdna:known chromosome:CEL140:IV:12124923:12126716:1 gene:M18.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023290 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12124928-12126603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M18.8
Entrez Gene 178158 Entrez gene
SwissProt O17549 EMBL-EBI
WormBase CE32911 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600139_AT similar to zinc finger, DHHC domain containing 6 cfa
CANINE_2:CFA.18214.1.S1_S_AT similar to zinc finger, DHHC domain containing 6 cfa
CANINE_2:CFAAFFX.17146.1.S1_AT similar to zinc finger, DHHC domain containing 6 cfa
DROSOPHILA_2:1623448_AT dm
DROSGENOME1:152082_AT dm
CHICKEN:GGA.9534.1.S1_AT similar to zinc finger, DHHC domain containing 6 gga
HG-U133_PLUS_2:218249_AT zinc finger, DHHC-type containing 6 hs
HG-U133A:218249_AT zinc finger, DHHC-type containing 6 hs
HG-U133A_2:218249_AT zinc finger, DHHC-type containing 6 hs
HU35KSUBA:RC_AA112413_AT zinc finger, DHHC-type containing 6 hs
U133_X3P:G11968052_3P_X_AT zinc finger, DHHC-type containing 6 hs
U133_X3P:G11968052_3P_AT zinc finger, DHHC-type containing 6 hs
HG-U95B:45315_AT zinc finger, DHHC-type containing 6 hs
HG-U95E:76869_AT zinc finger, DHHC-type containing 6 hs
MOE430B:1439057_X_AT zinc finger, DHHC domain containing 6 mm
MOUSE430_2:1439057_X_AT zinc finger, DHHC domain containing 6 mm
MOUSE430_2:1445707_AT zinc finger, DHHC domain containing 6 mm
MOE430B:1445707_AT zinc finger, DHHC domain containing 6 mm
MOUSE430_2:1441611_AT zinc finger, DHHC domain containing 6 mm
MOE430B:1441611_AT zinc finger, DHHC domain containing 6 mm
MOUSE430A_2:1438463_X_AT zinc finger, DHHC domain containing 6 mm
MOE430A:1438463_X_AT zinc finger, DHHC domain containing 6 mm
MOUSE430_2:1438463_X_AT zinc finger, DHHC domain containing 6 mm
MU11KSUBA:AA039132_S_AT zinc finger, DHHC domain containing 6 mm
MG-U74AV2:104581_AT zinc finger, DHHC domain containing 6 mm
MG-U74AV2:104583_AT zinc finger, DHHC domain containing 6 mm
MG-U74AV2:104582_G_AT zinc finger, DHHC domain containing 6 mm
MG-U74BV2:164550_F_AT zinc finger, DHHC domain containing 6 mm
MOE430A:1423300_AT zinc finger, DHHC domain containing 6 mm
MOUSE430A_2:1423300_AT zinc finger, DHHC domain containing 6 mm
MOUSE430_2:1423300_AT zinc finger, DHHC domain containing 6 mm
MU19KSUBA:TC20580_AT Zinc finger, DHHC domain containing 6, mRNA (cDNA clone MGC:30394 IMAGE:4459242) mm
MU19KSUBB:TC26619_AT Zinc finger, DHHC domain containing 6, mRNA (cDNA clone MGC:30394 IMAGE:4459242) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93457 Hypothetical protein M18.8 [Caenorhabditis elegans] emb|CAA92831.2| Hypothetical protein M18.8 [Caenorhabditis elegans] ref|NP_502302.2| M18.8 [Caenorhabditis elegans] 0.0
blast CAE62188 Hypothetical protein CBG06235 [Caenorhabditis briggsae] 0.0
blast AAH41720 MGC52647 protein [Xenopus laevis] 1.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.4E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502302.2 4 31-53,68-90,155-177,192-223
M18.8 4 31-53,68-90,155-177,192-223
Sequence
Target Sequence 
>C. ELEGANS:177080_AT
tcgtgagctgcttctgacaatttttttaaaaatacctactgtgttttcagatggaaagtc
tctgaacatgcgtaaagtccatgaaggtgacgatgaagaagaaattgaatggatcaagag
tctgggtgaatggacgtatccatatgatcttggttggaagagaaatcttcgtgaagtttt
tattggaatttttgacgggaggacaagaggaaatggaacatggtggccagttgtgaacgg
atgcacgcagtttacgtttacaatcgatcaactgctccagaaacaatcgaagcgtggtcg
ttcgcgtataatcaccatcagcgaagattttgctgggacctgctgcgcatctcgtaaatt
cggctgcaaagtttggatgaaacaaccgattatcgatggaaaatgtctcaaagtttcggc
tggtgaaacaatcgtggcaacacgtggaattgctggctgggtatatggattccgagagtc
ggatccacggaacaaaggatggttcccgcttgagatttctaatatgaaaaagaaaaacga
cacgaaaccggatgaaacatctactagtgaagatgagacatcccaggatacggctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGAGCTGCTTCTGACAATTTTT 353 605 729 Antisense
GGTGGCCAGTTGTGAACGGATGCAC 364 499 950 Antisense
ACGGATGCACGCAGTTTACGTTTAC 105 97 965 Antisense
TTACAATCGATCAACTGCTCCAGAA 658 683 986 Antisense
ACAATCGAAGCGTGGTCGTTCGCGT 623 113 1011 Antisense
GTCGTTCGCGTATAATCACCATCAG 144 473 1025 Antisense
CGAAGATTTTGCTGGGACCTGCTGC 517 251 1050 Antisense
CTGCTGCGCATCTCGTAAATTCGGC 315 237 1068 Antisense
AACACGTGGAATTGCTGGCTGGGTA 493 135 1167 Antisense
ATGGTTCCCGCTTGAGATTTCTAAT 591 51 1227 Antisense
TGAGACATCCCAGGATACGGCTACT 22 569 1302 Antisense
Sequence Source Affymetrix Proprietary Database