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[177079_at]

Description Y55F3BR.E /REP_DB=WormBase Gene ID /WP=CE22538 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59603.1
Cluster 6grp_total > 09      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-3)
A 		6.8
(3)
A 		3.5
(-0.8)
A 		5.2
(1.2)
A 		5
B 3
(-2.5)
A 		7.3
(0.4)
A 		2.2
(-3)
A 		11.3
(3)
A 		9
C 2.8
(-1.9)
A 		1.8
(-3)
A 		1.9
(-2.9)
A 		7.2
(3)
A 		5
avr 2.5
(-3) 		5.3
(0.1) 		2.5
(-3) 		7.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 22.8
(3)
A 		3.2
(-3)
A 		3.4
(-2.9)
A 		5.6
(-2.3)
A 		5.5
(-2.3)
A 		4.1
(-2.7)
A 		20
B 1.9
(-2.1)
A 		2.5
(-0.9)
A 		4.6
(3)
A 		3
(0)
A 		4.3
(2.4)
A 		1.4
(-3)
A 		3
C 4.8
(-1.8)
A 		1.9
(-3)
A 		5.1
(-1.7)
A 		12.5
(1.3)
A 		2.3
(-2.8)
A 		16.6
(3)
A 		15
avr 9.8
(3) 		2.5
(-3) 		4.4
(-1.4) 		7
(0.7) 		4
(-1.8) 		7.4
(1) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.6
(-3)
A 		1.5
(3)
A 		0.9
(-1)
A 		0.8
(-1.7)
A 		1
B 1
(-1.4)
A 		1.8
(1.1)
A 		0.5
(-3)
A 		2.4
(3)
A 		2
C 0.9
(0.4)
A 		0.5
(-3)
A 		0.6
(-2.1)
A 		1.2
(3)
A 		1
avr 0.8
(-2.3) 		1.3
(1.5) 		0.7
(-3) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 4.2
(3)
A 		1.1
(-2.3)
A 		0.7
(-3)
A 		1.4
(-1.8)
A 		1.6
(-1.5)
A 		1
(-2.5)
A 		4
B 0.7
(-2)
A 		0.8
(-1.5)
A 		1.1
(0)
A 		0.8
(-1.5)
A 		1.7
(3)
A 		0.5
(-3)
A 		1
C 1.8
(-1.6)
A 		0.6
(-3)
A 		1.3
(-2.2)
A 		2.5
(-0.7)
A 		0.8
(-2.8)
A 		5.6
(3)
A 		5
avr 2.2
(2.3) 		0.8
(-3) 		1
(-2.3) 		1.6
(0) 		1.4
(-0.8) 		2.4
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19300
Sequence Type Exemplar sequence
Representative Public ID Y55F3BR.E NCBI
Target Description Y55F3BR.E /REP_DB=WormBase Gene ID /WP=CE22538 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59603.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067598 NCBI Caenorhabditis elegans Y55F3BR.7 (Y55F3BR.7) mRNA, complete cds. 11/11 None
Y55F3BR.7 ENSEMBL cdna:known chromosome:CEL140:IV:840829:842118:-1 gene:Y55F3BR.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039566 7/11 Cross Hyb Matching Probes None
GENEFINDER00000039573 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:840834-842124(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3BR.7
Entrez Gene 190318 Entrez gene
SwissProt Q9N349 EMBL-EBI
WormBase CE22538 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59603 Hypothetical protein Y55F3BR.7 [Caenorhabditis elegans] ref|NP_499999.1| Y55F3BR.7 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499999.1 1 155-177
Y55F3BR.7 1 155-177
Sequence
Target Sequence 
>C. ELEGANS:177079_AT
gccttccgtcgaaaagtccgatcgaggaactgcccgtctattctccgatctattcgtcga
cgttccgcacggctgtcggaagctccagcaactctatcaacactgctggcctggatggat
tgagaactccgatgagatcctctggagatgacagtggaaaaacgatgaaaacatccatta
ctaccgataaaaagatttctgatcagaataccttgtttttcttccaaaatttcccaattt
tttctggaattttttactggaacccaactcaaccagctgatgagccttacgcctacgcct
cctccacgggaaccacctgctgtgagagcagacgggcggtgctcaatgggacaaaatgga
gcacaaaaagaagcaagtttttgaaaagaagaaacaacaacacagcttggaggaccaaca
attctcttttcgacacctttttcttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTTCCGTCGAAAAGTCCGATCGA 434 261 59 Antisense
AAAGTCCGATCGAGGAACTGCCCGT 55 119 71 Antisense
TATTCTCCGATCTATTCGTCGACGT 484 663 97 Antisense
TCAACACTGCTGGCCTGGATGGATT 190 629 155 Antisense
GAACTCCGATGAGATCCTCTGGAGA 478 349 182 Antisense
TCAGAATACCTTGTTTTTCTTCCAA 275 607 261 Antisense
TCAACCAGCTGATGAGCCTTACGCC 327 631 327 Antisense
TGCTGTGAGAGCAGACGGGCGGTGC 481 577 376 Antisense
CGGGCGGTGCTCAATGGGACAAAAT 420 243 391 Antisense
GAGGACCAACAATTCTCTTTTCGAC 112 405 468 Antisense
TCTTTTCGACACCTTTTTCTTGGCA 549 613 483 Antisense
Sequence Source Affymetrix Proprietary Database