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[177078_at]

Description M18.3 /REP_DB=WormBase Gene ID /WP=CE06195 /TR=Q21555 /GB=CAA92825.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 93      6grp_total > 85      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 724
1 2 3 4 range
A 291.7
(-2.8)
P 		278.6
(-2.9)
P 		272.3
(-3)
P 		941.1
(3)
P 		669
B 325.4
(-2)
P 		247.8
(-2.7)
P 		217.6
(-3)
P 		876
(3)
P 		658
C 265.2
(-2.7)
P 		310.3
(-2.3)
P 		226.5
(-3)
P 		905.4
(3)
P 		679
avr 294.1
(-2.5) 		278.9
(-2.6) 		238.8
(-3) 		907.5
(3) 		669

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 295
(-3)
P 		328.7
(-2.4)
P 		322.3
(-2.5)
P 		630.9
(2.7)
P 		415
(-1)
P 		651.6
(3)
P 		357
B 262.7
(-3)
P 		274.7
(-2.7)
P 		285.3
(-2.4)
P 		450.3
(1.9)
P 		468.5
(2.3)
P 		494.3
(3)
P 		232
C 322.9
(-2.8)
P 		316.6
(-3)
P 		379.7
(-1.1)
P 		368.4
(-1.5)
P 		466.4
(1.4)
P 		518.8
(3)
P 		202
avr 293.5
(-3) 		306.7
(-2.7) 		329.1
(-2.2) 		483.2
(1.4) 		450
(0.6) 		554.9
(3) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 106.2
(0.5)
P 		60.5
(-3)
P 		71.2
(-2.2)
P 		137.8
(3)
P 		77
B 103.8
(-0.6)
P 		61.2
(-2.5)
P 		50.4
(-3)
P 		186.7
(3)
P 		136
C 87.8
(-2.3)
P 		89.2
(-2.2)
P 		78.9
(-3)
P 		152.7
(3)
P 		74
avr 99.3
(-0.9) 		70.3
(-2.8) 		66.8
(-3) 		159.1
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 54.4
(-3)
P 		116.9
(0.6)
P 		70.2
(-2.1)
P 		160
(3)
P 		125.2
(1)
P 		158.6
(2.9)
P 		106
B 91.4
(-1.9)
P 		91.4
(-1.9)
P 		69.3
(-3)
P 		119.3
(-0.5)
P 		190.3
(3)
P 		184.3
(2.7)
P 		121
C 119.7
(-0.3)
P 		96.6
(-1.6)
P 		96.6
(-1.6)
P 		74.1
(-3)
P 		150.9
(1.6)
P 		173.7
(3)
P 		100
avr 88.5
(-2.4) 		101.6
(-1.5) 		78.7
(-3) 		117.8
(-0.5) 		155.5
(1.9) 		172.2
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9633
Sequence Type Exemplar sequence
Representative Public ID M18.3 NCBI
Target Description M18.3 /REP_DB=WormBase Gene ID /WP=CE06195 /TR=Q21555 /GB=CAA92825.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069895 NCBI Caenorhabditis elegans M18.3 (M18.3) mRNA, complete cds. 11/11 None
SNAP00000023281 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12105828:12108320:1 11/11 None
GENEFINDER00000023291 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12105828:12108320:1 11/11 None
M18.3 ENSEMBL cdna:known chromosome:CEL140:IV:12105827:12108320:1 gene:M18.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12105833-12108326(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M18.3
Entrez Gene 178154 Entrez gene
SwissProt Q21555 EMBL-EBI
WormBase CE06195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92825 Hypothetical protein M18.3 [Caenorhabditis elegans] ref|NP_502296.1| M18.3 [Caenorhabditis elegans] 0.0
blast CAE62182 Hypothetical protein CBG06229 [Caenorhabditis briggsae] 1.0E-176
blast AAH51619 Similar to hypothetical protein FLJ20752 [Danio rerio] ref|NP_956389.1| hypothetical protein LOC368827 [Danio rerio] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:177078_AT
tcgcctcattcttgtcaacgttgatagccaaaccctcgaagtgaatcgcaaagaatctat
ctcagatgcagctcaaccagcgagttcagtacttgatgactcactgtcttgtgttctgtg
gtttgctgtcagagccgaaggagttgatagtgagaatcaacaatcagtgaggtcacctgc
aactacatgccttctgggatcaggagcagatgaacttcttgccggatacgcaaggcatcg
aactcgatttgagaaggaacaaattccagaaaatgtagcggaagaatgtgaaaatgaatt
gcgaaggctgggatcgagaaatggaggaagagatgctagagttgctgctcaacttgggaa
gaccattttatctccacttctcgaagataccgtagtcacttggctcaacgcacttccagt
cgattccaaatgggatctatcattgccacgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCTCATTCTTGTCAACGTTGAT 461 599 813 Antisense
CAACGTTGATAGCCAAACCCTCGAA 302 187 828 Antisense
CTATCTCAGATGCAGCTCAACCAGC 255 225 869 Antisense
GACTCACTGTCTTGTGTTCTGTGGT 62 375 910 Antisense
AGTGAGGTCACCTGCAACTACATGC 423 59 978 Antisense
GGAGCAGATGAACTTCTTGCCGGAT 507 519 1015 Antisense
GCCGGATACGCAAGGCATCGAACTC 501 283 1033 Antisense
GAAGACCATTTTATCTCCACTTCTC 559 339 1170 Antisense
GATACCGTAGTCACTTGGCTCAACG 66 425 1198 Antisense
CGCACTTCCAGTCGATTCCAAATGG 66 255 1221 Antisense
ATGGGATCTATCATTGCCACGTGGA 46 51 1242 Antisense
Sequence Source Affymetrix Proprietary Database