[Home] | [Total List]

[177077_at]

Description Y48G1BL.G /REP_DB=WormBase Gene ID /WP=CE22177 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60693.1
Cluster 6grp_total > 60      4grp_total > 0      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 61.9
(-2.7)
A 		55.7
(-3)
A 		132.4
(1.3)
A 		162.3
(3)
P 		107
B 108
(3)
A 		86
(-0.9)
A 		87
(-0.7)
P 		74
(-3)
A 		34
C 73.9
(-1.4)
A 		97.4
(3)
A 		65.4
(-3)
P 		90.9
(1.8)
P 		32
avr 81.3
(-2.7) 		79.7
(-3) 		94.9
(0.1) 		109.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 96.2
(3)
M 		57.7
(-3)
A 		81.8
(0.8)
A 		92.8
(2.5)
A 		77.8
(0.1)
A 		62.9
(-2.2)
A 		39
B 64.6
(-2)
A 		64.7
(-2)
P 		66.5
(-1.8)
P 		106.5
(3)
P 		83.9
(0.3)
A 		56.6
(-3)
P 		50
C 45.5
(-3)
A 		114
(2.5)
A 		119.6
(3)
A 		111.3
(2.3)
P 		54.2
(-2.3)
A 		45.6
(-3)
A 		74
avr 68.8
(-1.3) 		78.8
(-0.1) 		89.3
(1.2) 		103.5
(3) 		72
(-0.9) 		55
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.5
(-0.2)
A 		12.1
(-3)
A 		34.6
(3)
A 		23.8
(0.1)
P 		23
B 34.4
(3)
A 		21.2
(-1.3)
A 		20.2
(-1.6)
P 		15.8
(-3)
A 		19
C 24.5
(1.3)
A 		28
(3)
A 		22.8
(0.5)
P 		15.3
(-3)
P 		13
avr 27.1
(3) 		20.4
(-1.6) 		25.9
(2.2) 		18.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 17.7
(-1.2)
M 		20.5
(0.8)
A 		17.8
(-1.2)
A 		23.5
(3)
A 		23.5
(3)
A 		15.3
(-3)
A 		8
B 22.5
(-0.9)
A 		21.5
(-1.2)
P 		16.2
(-3)
P 		28.2
(1)
P 		34.1
(3)
A 		21.1
(-1.4)
P 		18
C 16.9
(-2.5)
A 		34.8
(3)
A 		30.4
(1.6)
A 		22.4
(-0.8)
P 		17.5
(-2.3)
A 		15.3
(-3)
A 		20
avr 19
(-1.7) 		25.6
(3) 		21.5
(0.1) 		24.7
(2.4) 		25
(2.6) 		17.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18838
Sequence Type Exemplar sequence
Representative Public ID Y48G1BL.G NCBI
Target Description Y48G1BL.G /REP_DB=WormBase Gene ID /WP=CE22177 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60693.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026605
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000016206 ENSEMBL cdna:SNAP chromosome:CEL140:I:203067:211667:1 None
F18A11.7 ENSEMBL cdna:pseudogene chromosome:CEL140:II:13039148:13039690:1 gene:F18A11.7 None
NM_001026605 NCBI Caenorhabditis elegans Y48G1BL.7 (Y48G1BL.7) mRNA, complete cds. None
SNAP00000012462 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5490542:5490769:-1 None
SNAP00000029954 ENSEMBL cdna:SNAP chromosome:CEL140:II:13039464:13039691:1 None
Y48G1BL.7 ENSEMBL cdna:known chromosome:CEL140:I:209320:211667:1 gene:Y48G1BL.7 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016208 10/11 Negative Strand Matching Probes None
GENEFINDER00000016213 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:211439-215327(+) 85.03 87.87
Public Domain and Genome References
Gene Title
Ensembl Y48G1BL.7
F18A11.7
Entrez Gene 3565824 Entrez gene
SwissProt Q688Z7 EMBL-EBI
WormBase CE36747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021776 Y48G1BL.7 [Caenorhabditis elegans] gb|AAT39976.1| Hypothetical protein Y48G1BL.7 [Caenorhabditis elegans] 0.0
blast NP_490693 ATM (ataxia telangectasia mutated) family member (atm-1) [Caenorhabditis elegans] gb|AAF60692.2| Atm (ataxia telangectasia mutated) family protein 1 [Caenorhabditis elegans] 0.0
blast CAE74307 Hypothetical protein CBG22015 [Caenorhabditis briggsae] 0.0
blast CAE74308 Hypothetical protein CBG22016 [Caenorhabditis briggsae] 5.0E-84
blast NP_001021776 Y48G1BL.7 [Caenorhabditis elegans] gb|AAT39976.1| Hypothetical protein Y48G1BL.7 [Caenorhabditis elegans] 4.0E-78
blast CAD92405 Hypothetical protein Y87G2A.16 [Caenorhabditis elegans] ref|NP_001021832.1| Y87G2A.16 [Caenorhabditis elegans] 6.0E-38
blast NP_001021776 Y48G1BL.7 [Caenorhabditis elegans] gb|AAT39976.1| Hypothetical protein Y48G1BL.7 [Caenorhabditis elegans] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 3.8E-13
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.5E-27
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 2.4E-14
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 3.3E-5
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 1.4E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021776.1 1 7-24
Y48G1BL.7 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:177077_AT
cgtggcgagacgtatttctcccacctgcagagccaactgcacaactcgacatgcgaattt
atccttgcacatggccaaaagccctccgtcgatcatttgacgaagcaattcccgctgctc
ggccggtgttgcgagctcgacgagcttctgaacgatgaaattgccacttcgactgtggca
gagccccacgaagagcgtcgtggattcggtgagcttctcgaagacggctttacgaatctg
atcttcggaatccagtgggtagttggcctccaagaactttacgcccgatggatcgattgc
gaaatcgatgagctgcccgttgaacagcacatcttcgagcgaaatgaaaatcggagcaac
tggtggtggggtctcatcgtcggaagatcccgatccactgttgaagatgtagctgtccga
gtcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGCGAGACGTATTTCTCCCACC 555 243 397 Antisense
GCGAATTTATCCTTGCACATGGCCA 285 287 449 Antisense
GAGCGTCGTGGATTCGGTGAGCTTC 183 387 589 Antisense
GAGCTTCTCGAAGACGGCTTTACGA 184 373 607 Antisense
GAATCCAGTGGGTAGTTGGCCTCCA 9 331 644 Antisense
TGGCCTCCAAGAACTTTACGCCCGA 401 537 660 Antisense
GAAATCGATGAGCTGCCCGTTGAAC 576 361 697 Antisense
CCCGTTGAACAGCACATCTTCGAGC 217 261 712 Antisense
GGGTCTCATCGTCGGAAGATCCCGA 636 497 765 Antisense
AAGATCCCGATCCACTGTTGAAGAT 345 155 780 Antisense
TGAAGATGTAGCTGTCCGAGTCGGA 255 573 798 Antisense
Sequence Source Affymetrix Proprietary Database