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[177075_at]

Description Y55F3BR.B /REP_DB=WormBase Gene ID /WP=CE22535 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59600.1
Cluster 6grp_total > 93      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 89.9
(2.3)
M 		32.9
(-3)
A 		97
(3)
A 		58.4
(-0.6)
A 		64
B 73.1
(0.8)
P 		84.1
(2.6)
A 		49
(-3)
A 		86.9
(3)
A 		38
C 61.1
(0.4)
A 		34.5
(-3)
A 		44.1
(-1.8)
A 		81.2
(3)
A 		47
avr 74.7
(2.8) 		50.5
(-3) 		63.4
(0.1) 		75.5
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 50.4
(-2.4)
A 		53.5
(-2.2)
A 		39.3
(-3)
A 		72
(-1.1)
A 		142.9
(3)
M 		77.3
(-0.8)
A 		104
B 99.1
(2.2)
A 		73.5
(0.2)
A 		43.5
(-2.1)
A 		108.9
(3)
M 		75.9
(0.4)
P 		32.7
(-3)
P 		76
C 81.7
(3)
P 		64
(0.8)
A 		32.5
(-3)
A 		37.1
(-2.4)
A 		68.1
(1.3)
P 		72.8
(1.9)
P 		49
avr 77.1
(1.1) 		63.7
(-0.3) 		38.4
(-3) 		72.7
(0.6) 		95.6
(3) 		60.9
(-0.6) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 32.7
(3)
M 		7.1
(-3)
A 		25.4
(1.3)
A 		8.5
(-2.7)
A 		26
B 23.3
(3)
P 		20.8
(1.7)
A 		11.4
(-3)
A 		18.5
(0.6)
A 		12
C 20.2
(3)
A 		9.9
(-3)
A 		15.4
(0.2)
A 		13.7
(-0.8)
A 		10
avr 25.4
(3) 		12.6
(-3) 		17.4
(-0.8) 		13.6
(-2.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.3
(-2.9)
A 		19
(-1.2)
A 		8.6
(-3)
A 		18.3
(-1.3)
A 		43.1
(3)
M 		18.8
(-1.2)
A 		35
B 34.5
(3)
A 		24.5
(0.5)
A 		10.6
(-3)
A 		28.8
(1.6)
M 		30.8
(2.1)
P 		12.2
(-2.6)
P 		24
C 30.3
(3)
P 		19.5
(0.2)
A 		8.3
(-2.8)
A 		7.5
(-3)
A 		22
(0.8)
P 		24.4
(1.4)
P 		23
avr 24.7
(1.1) 		21
(0.1) 		9.2
(-3) 		18.2
(-0.6) 		32
(3) 		18.5
(-0.6) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19169
Sequence Type Exemplar sequence
Representative Public ID Y55F3BR.B NCBI
Target Description Y55F3BR.B /REP_DB=WormBase Gene ID /WP=CE22535 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59600.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028343(10), NM_001028344(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028343 NCBI Caenorhabditis elegans Y55F3BR.8a (Y55F3BR.8) mRNA, complete cds. 10/11 None
NM_001028344 NCBI Caenorhabditis elegans Y55F3BR.8b (Y55F3BR.8) mRNA, complete cds. 9/11 None
SNAP00000039569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:849406:857001:-1 10/11 None
GENEFINDER00000039575 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:849286:854374:-1 9/11 None
Y55F3BR.8a ENSEMBL cdna:known chromosome:CEL140:IV:849291:854780:-1 gene:Y55F3BR.8 10/11 None
Y55F3BR.8b ENSEMBL cdna:known chromosome:CEL140:IV:849406:854378:-1 gene:Y55F3BR.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:850455-852548(-) 80.69 100.0
Public Domain and Genome References
Ensembl Y55F3BR.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59601 Hypothetical protein Y55F3BR.8a [Caenorhabditis elegans] ref|NP_001023514.1| Y55F3BR.8a [Caenorhabditis elegans] 0.0
blast AAV34782 Hypothetical protein Y55F3BR.8b [Caenorhabditis elegans] ref|NP_001023515.1| Y55F3BR.8b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.36
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Pfam IPR002110 EMBL-EBI Ankyrin 0.36
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Pfam IPR002110 EMBL-EBI Ankyrin 0.36
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Sequence
Target Sequence 
>C. ELEGANS:177075_AT
gtcgattcgaatccacgttttctcgtgaataccggtgggtttctacgtatttctgcaccg
aaatccaacaaccggctccacacagcttacagtatcccagaagccgccggctacctacag
tacctcgccgaccacagctacagtaaccgtgtcagcacaggcgggaccatttttcacgga
gcgagaagctcgagatttcgcaaaaagctggcaaaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATTCGAATCCACGTTTTCTCG 681 471 82 Antisense
TTCTCGTGAATACCGGTGGGTTTCT 633 667 101 Antisense
GTGGGTTTCTACGTATTTCTGCACC 660 487 116 Antisense
TTTCTGCACCGAAATCCAACAACCG 105 671 131 Antisense
TCCACACAGCTTACAGTATCCCAGA 159 589 158 Antisense
CCGACCACAGCTACAGTAACCGTGT 257 263 209 Antisense
GTAACCGTGTCAGCACAGGCGGGAC 605 461 224 Antisense
TCAGCACAGGCGGGACCATTTTTCA 627 623 233 Antisense
CGGGACCATTTTTCACGGAGCGAGA 280 243 243 Antisense
GGAGCGAGAAGCTCGAGATTTCGCA 30 521 259 Antisense
GATTTCGCAAAAAGCTGGCAAACCG 162 425 275 Antisense
Sequence Source Affymetrix Proprietary Database