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[177073_at]

Description Y73B6BL.I /REP_DB=WormBase Gene ID /WP=CE26282 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23468.1
Cluster 6grp_total > 43      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 22.5
(2.3)
A 		4.2
(-3)
A 		24.8
(3)
A 		17.4
(0.8)
A 		21
B 10.8
(-1.7)
A 		38.7
(3)
A 		8.3
(-2.1)
A 		2.7
(-3)
A 		36
C 7.8
(-1.7)
A 		19.8
(3)
A 		4.5
(-3)
A 		18
(2.3)
A 		15
avr 13.7
(-2.1) 		20.9
(3) 		12.5
(-3) 		12.7
(-2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 29.9
(1.5)
A 		4.9
(-2.7)
A 		38.8
(3)
A 		3
(-3)
A 		4.6
(-2.7)
A 		6.3
(-2.4)
A 		36
B 17.2
(3)
A 		2.7
(-3)
A 		6.8
(-1.3)
A 		5.9
(-1.7)
A 		8.4
(-0.6)
A 		5
(-2)
A 		15
C 4.4
(-2.7)
A 		23.1
(0.9)
A 		34.3
(3)
A 		6.9
(-2.2)
A 		5
(-2.6)
A 		2.8
(-3)
A 		32
avr 17.2
(0.4) 		10.2
(-1.5) 		26.6
(3) 		5.3
(-2.8) 		6
(-2.6) 		4.7
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.2
(3)
A 		0.9
(-3)
A 		6.5
(1.6)
A 		2.5
(-1.7)
A 		7
B 3.4
(-1.1)
A 		9.5
(3)
A 		1.9
(-2.1)
A 		0.6
(-3)
A 		9
C 2.6
(-1.5)
A 		5.7
(3)
A 		1.6
(-3)
A 		3
(-1)
A 		4
avr 4.7
(1.8) 		5.4
(3) 		3.3
(-0.7) 		2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.5
(0.7)
A 		1.8
(-2.2)
A 		8.4
(3)
A 		0.8
(-3)
A 		1.4
(-2.5)
A 		1.5
(-2.4)
A 		8
B 6
(3)
A 		0.9
(-3)
A 		1.6
(-2.2)
A 		1.6
(-2.2)
A 		3.4
(-0.1)
A 		1.9
(-1.8)
A 		5
C 1.6
(-2.5)
A 		7
(1.7)
A 		8.7
(3)
A 		1.4
(-2.6)
A 		1.6
(-2.5)
A 		0.9
(-3)
A 		8
avr 4.4
(0.8) 		3.2
(-0.7) 		6.2
(3) 		1.3
(-3) 		2.1
(-2) 		1.4
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19272
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.I NCBI
Target Description Y73B6BL.I /REP_DB=WormBase Gene ID /WP=CE26282 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23468.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068575 NCBI Caenorhabditis elegans Y73B6BL.20 (Y73B6BL.20) mRNA, complete cds. 11/11 None
Y73B6BL.20 ENSEMBL cdna:known chromosome:CEL140:IV:6384834:6385236:-1 gene:Y73B6BL.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6384839-6385242(-) 89.53 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.20
Entrez Gene 190654 Entrez gene
SwissProt Q9GUF6 EMBL-EBI
WormBase CE26282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23468 Hypothetical protein Y73B6BL.20 [Caenorhabditis elegans] ref|NP_500976.1| Y73B6BL.20 [Caenorhabditis elegans] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:177073_AT
gaagaggtcgacttttccaattttgtctatcgttttctctttcttttcctggcatcaagg
agcccgcgagcctttagagaagagggctctttacacacaaaattggataaaattgaaaaa
gaagaggaaaattcttttctctccttttctttccttcacattttcttttgtcccacggct
tcttgcttctcgaaccgatctcgacgtcgtctcgcgtcgtttacgggtaatttgagccca
cacgtcgtcacccgtttggagctctgcgccaaggaaaccatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGGTCGACTTTTCCAATTTTG 337 337 22 Antisense
TCCAATTTTGTCTATCGTTTTCTCT 306 587 37 Antisense
TCTCTTTCTTTTCCTGGCATCAAGG 349 613 57 Antisense
TCTTTTCCTGGCATCAAGGAGCCCG 110 617 63 Antisense
AGCCCGCGAGCCTTTAGAGAAGAGG 12 83 82 Antisense
AAGAGGGCTCTTTACACACAAAATT 46 155 101 Antisense
GAAGAGGAAAATTCTTTTCTCTCCT 87 339 142 Antisense
TCTCGCGTCGTTTACGGGTAATTTG 441 607 231 Antisense
CGGGTAATTTGAGCCCACACGTCGT 291 243 245 Antisense
CGTTTGGAGCTCTGCGCCAAGGAAA 402 245 274 Antisense
GCTCTGCGCCAAGGAAACCATCAAA 100 301 282 Antisense
Sequence Source Affymetrix Proprietary Database