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[177072_at]

Description Y48G1A.E /REP_DB=WormBase Gene ID /WP=CE22168 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60683.1
Cluster 6grp_high1_10_10 > 55      6grp_total > 47      4grp_total > 53      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 180.4
(3)
P 		111.7
(-2.2)
P 		140.3
(-0)
P 		100.4
(-3)
A 		80
B 192.1
(3)
P 		153
(1.2)
A 		126.2
(-0.1)
A 		62.5
(-3)
A 		130
C 129.4
(1.2)
P 		158.6
(3)
P 		109.2
(-0.1)
P 		63.3
(-3)
A 		95
avr 167.3
(3) 		141.1
(1.3) 		125.2
(0.3) 		75.4
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 64.4
(-1.3)
A 		134.4
(2.6)
P 		33.4
(-3)
A 		141.5
(3)
P 		88.1
(0)
P 		124.2
(2)
M 		108
B 104.5
(-1.3)
P 		109.6
(-0.4)
P 		115.8
(0.8)
P 		95.4
(-3)
A 		100.3
(-2.1)
P 		127.8
(3)
P 		32
C 143.1
(3)
P 		97.6
(0)
P 		52.6
(-3)
A 		82.6
(-1)
A 		52
(-3)
A 		127.7
(2)
P 		91
avr 104
(0.7) 		113.9
(1.7) 		67.3
(-3) 		106.5
(1) 		80.1
(-1.7) 		126.6
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 65.7
(3)
P 		24.3
(-1.9)
P 		36.7
(-0.4)
P 		14.7
(-3)
A 		51
B 61.3
(3)
P 		37.8
(0.1)
A 		29.3
(-1)
A 		13.3
(-3)
A 		48
C 42.8
(2.5)
P 		45.6
(3)
P 		38.1
(1.7)
P 		10.7
(-3)
A 		35
avr 56.6
(3) 		35.9
(0.2) 		34.7
(-0) 		12.9
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 11.9
(-2.3)
A 		47.8
(3)
P 		7.3
(-3)
A 		35.9
(1.2)
P 		26.6
(-0.1)
P 		30.2
(0.4)
M 		41
B 36.4
(-0)
P 		36.5
(0)
P 		28.1
(-2.2)
P 		25.3
(-3)
A 		40.7
(1.1)
P 		47.6
(3)
P 		22
C 53
(3)
P 		29.8
(-0.5)
P 		13.4
(-3)
A 		16.6
(-2.5)
A 		16.8
(-2.5)
A 		42.8
(1.5)
P 		40
avr 33.8
(1.4) 		38
(2.4) 		16.3
(-3) 		25.9
(-0.6) 		28
(-0.1) 		40.2
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18878
Sequence Type Exemplar sequence
Representative Public ID Y48G1A.E NCBI
Target Description Y48G1A.E /REP_DB=WormBase Gene ID /WP=CE22168 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60683.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170793(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170793 NCBI Caenorhabditis elegans Y48G1A.4 (Y48G1A.4) mRNA, complete cds. 10/11 None
SNAP00000006797 ENSEMBL cdna:SNAP chromosome:CEL140:I:316877:330729:1 10/11 None
GENEFINDER00000006804 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:323861:330729:1 10/11 None
Y48G1A.4 ENSEMBL cdna:known chromosome:CEL140:I:323861:330729:1 gene:Y48G1A.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:323860-330729(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1A.4
Entrez Gene 171622 Entrez gene
SwissProt Q9N3Q9 EMBL-EBI
WormBase CE27000 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259367_AT expressed protein at
CANINE:1606054_AT similar to CG5824-PA cfa
CANINE_2:CFA.2286.1.S1_S_AT similar to CG5824-PA cfa
DROSOPHILA_2:1630445_AT dm
DROSGENOME1:153862_AT dm
CHICKEN:GGA.9212.1.S1_AT similar to RIKEN cDNA 2610033H07 gga
CHICKEN:GGA.9212.1.S1_S_AT similar to RIKEN cDNA 2610033H07 gga
CHICKEN:GGAAFFX.9972.1.S1_AT similar to RIKEN cDNA 2610033H07 gga
HG-U133A:214661_S_AT chromosome 4 open reading frame 9 hs
HG-U133A_2:214661_S_AT chromosome 4 open reading frame 9 hs
HG-U133_PLUS_2:214661_S_AT chromosome 4 open reading frame 9 hs
HUGENEFL:AB000467_AT chromosome 4 open reading frame 9 hs
U133_X3P:HS.117487.0.S1_3P_A_AT chromosome 4 open reading frame 9 hs
HG-U95AV2:39847_AT chromosome 4 open reading frame 9 hs
HG-U133_PLUS_2:215746_AT Chromosome 4 open reading frame 9 hs
HG-U133A_2:215746_AT Chromosome 4 open reading frame 9 hs
HG-U133A:215746_AT Chromosome 4 open reading frame 9 hs
HG-U95AV2:39475_AT Chromosome 4 open reading frame 9 hs
HUGENEFL:L37199_AT Chromosome 4 open reading frame 9 hs
HUGENEFL:L34409_AT Chromosome 4 open reading frame 9 hs
U133_X3P:HS.94799.0.S1_3P_AT Chromosome 4 open reading frame 9 hs
HG-U95AV2:35034_AT Chromosome 4 open reading frame 9 hs
HG-U95D:73414_AT Chromosome 4 open reading frame 9 hs
HG-U133_PLUS_2:215745_AT Chromosome 4 open reading frame 9 hs
HG-U133A_2:215745_AT Chromosome 4 open reading frame 9 hs
HG-U133A:215745_AT Chromosome 4 open reading frame 9 hs
HG-U133_PLUS_2:230476_AT Chromosome 4 open reading frame 9 hs
HG-U133B:230476_AT Chromosome 4 open reading frame 9 hs
HG-U133_PLUS_2:241001_AT Chromosome 4 open reading frame 9 hs
HG-U133B:241001_AT Chromosome 4 open reading frame 9 hs
HG-U95E:84588_AT Chromosome 4 open reading frame 9 hs
HU35KSUBC:RC_W69178_AT Chromosome 4 open reading frame 9 hs
U133_X3P:HS.170381.0.A1_3P_AT Chromosome 4 open reading frame 9 hs
U133_X3P:HS.258305.0.A1_3P_AT Chromosome 4 open reading frame 9 hs
MG-U74BV2:107772_AT RIKEN cDNA 2610033H07 gene mm
MG-U74BV2:162934_AT RIKEN cDNA 2610033H07 gene mm
MOE430A:1423991_AT RIKEN cDNA 2610033H07 gene mm
MOUSE430A_2:1423991_AT RIKEN cDNA 2610033H07 gene mm
MOUSE430_2:1423991_AT RIKEN cDNA 2610033H07 gene mm
RG-U34B:RC_AA997734_AT similar to 2610033H07Rik protein (predicted) rn
RAE230A:1374764_AT similar to 2610033H07Rik protein (predicted) rn
RAT230_2:1374764_AT similar to 2610033H07Rik protein (predicted) rn
YEAST_2:1770876_AT Nucleolar protein, forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits; also present in the small subunit processome complex, which is required for processing of pre-18S rRNA Sc
Protein Similarities
Method ID Description E-Value
blast AAF60680 Hypothetical protein Y48G1A.4 [Caenorhabditis elegans] ref|NP_740774.1| Y48G1A.4 [Caenorhabditis elegans] 0.0
blast CAE74346 Hypothetical protein CBG22064 [Caenorhabditis briggsae] 0.0
blast AAH53635 Gene near HD on 4p16.3 with homology to hypothetical S. pombe gene [Homo sapiens] ref|NP_003694.1| hypothetical protein LOC8602 [Homo sapiens] sp|P78316|NOP14_HUMAN Probable nucleolar complex protein 2.0E-60
blast EAL27459 GA19157-PA [Drosophila pseudoobscura] 2.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR007276 EMBL-EBI Nop14-like protein 5.0E-35
Pfam IPR007276 EMBL-EBI Nop14-like protein 3.6E-14
Pfam IPR007276 EMBL-EBI Nop14-like protein 6.3E-11
Pfam IPR007276 EMBL-EBI Nop14-like protein 2.7E-15
Pfam IPR007276 EMBL-EBI Nop14-like protein 3.3E-27
Pfam IPR007276 EMBL-EBI Nop14-like protein 3.6E-14
Pfam IPR007276 EMBL-EBI Nop14-like protein 6.3E-11
Pfam IPR007276 EMBL-EBI Nop14-like protein 2.7E-15
Pfam IPR007276 EMBL-EBI Nop14-like protein 2.4E-36
Pfam IPR007276 EMBL-EBI Nop14-like protein 3.6E-14
Pfam IPR007276 EMBL-EBI Nop14-like protein 6.3E-11
Pfam IPR007276 EMBL-EBI Nop14-like protein 2.7E-15
Sequence
Target Sequence 
>C. ELEGANS:177072_AT
tgacgagaaaatacactggccccgcactccagccaatctccctgaccacaatcttcaaca
attccccatccgatccatctctaaagcttcacgttcttcgtgctctgctctccctcatcc
aacatctccgtgtaatctactccaaccaaaatgagacctattctatcgttttcaagccat
tcctccggattttggaatcaattcaagccaaaaatcttccagccgaggtccaggaagagc
tggagactctgtgcgcctcaatgaaggctgaaattggagccaagtgccgtctggtgcacc
tgtcgctggtgaaaaccgaaaagagcatgctgaaaatgctggaaccccgtttcgagtggg
atttcgatccggaacgcccacatcacggacccaaagacgagaagaagaagctgacgaaga
atctgaggaacgaaagacgcggagccatcaaggagctcagaaaggatacggcattcttgg
ccaggaagcaattgtcgagtgtcaagacgaaggatcgtgcgagaattgcggccacgaaac
gtgtcatgggcggtcttatgcagcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGAGAAAATACACTGGCCCCGC 616 569 1931 Antisense
TGACCACAATCTTCAACAATTCCCC 608 569 1973 Antisense
CGATCCATCTCTAAAGCTTCACGTT 178 247 2001 Antisense
CCAACATCTCCGTGTAATCTACTCC 57 277 2049 Antisense
GAGACCTATTCTATCGTTTTCAAGC 594 391 2083 Antisense
TCAAGCCATTCCTCCGGATTTTGGA 585 625 2102 Antisense
GAAGAGCTGGAGACTCTGTGCGCCT 531 339 2164 Antisense
TCTGGTGCACCTGTCGCTGGTGAAA 420 607 2220 Antisense
GATACGGCATTCTTGGCCAGGAAGC 182 425 2395 Antisense
GCGAGAATTGCGGCCACGAAACGTG 521 289 2449 Antisense
TCATGGGCGGTCTTATGCAGCAGCA 165 623 2474 Antisense
Sequence Source Affymetrix Proprietary Database