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[177071_at]

Description Y34B4A.A /REP_DB=WormBase Gene ID /WP=CE21517 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59636.1
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_high_8_8 > 50      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 194.7
(3)
P 		146.4
(-3)
P 		171.8
(0.2)
P 		163.1
(-0.9)
P 		48
B 202.4
(3)
P 		121.8
(-2.3)
M 		175.4
(1.2)
P 		110.3
(-3)
P 		92
C 186.4
(2.7)
P 		191.1
(3)
P 		175
(2)
P 		90.2
(-3)
P 		101
avr 194.5
(3) 		153.1
(-0.4) 		174.1
(1.3) 		121.2
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 205.4
(1.6)
P 		229.3
(3)
P 		126.8
(-3)
P 		156.4
(-1.3)
P 		179.3
(0.1)
P 		193.5
(0.9)
P 		103
B 179.4
(0.9)
P 		157.6
(-1.1)
P 		139.8
(-2.7)
P 		202.8
(3)
P 		168.8
(-0.1)
P 		136.3
(-3)
P 		67
C 233.7
(3)
P 		187.1
(0.7)
P 		154.7
(-0.9)
P 		121
(-2.5)
P 		218.4
(2.3)
P 		111
(-3)
P 		123
avr 206.2
(3) 		191.3
(1.6) 		140.4
(-3) 		160.1
(-1.2) 		188.8
(1.4) 		146.9
(-2.4) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 70.9
(3)
P 		31.8
(-2)
P 		44.9
(-0.3)
P 		23.9
(-3)
P 		47
B 64.5
(3)
P 		30.1
(-2)
M 		40.6
(-0.5)
P 		23.5
(-3)
P 		41
C 61.7
(3)
P 		54.9
(2.1)
P 		61
(2.9)
P 		15.2
(-3)
P 		47
avr 65.7
(3) 		38.9
(-0.6) 		48.8
(0.7) 		20.9
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 37.9
(-1.9)
P 		81.6
(3)
P 		27.6
(-3)
P 		39.7
(-1.7)
P 		54.1
(-0.1)
P 		47.1
(-0.8)
P 		54
B 62.4
(1.9)
P 		52.5
(0.2)
P 		33.9
(-3)
P 		53.7
(0.4)
P 		68.6
(3)
P 		50.8
(-0.1)
P 		35
C 86.6
(3)
P 		57.1
(0.2)
P 		39.4
(-1.5)
P 		24.3
(-3)
P 		70.7
(1.5)
P 		37.1
(-1.8)
P 		62
avr 62.3
(2.6) 		63.7
(2.8) 		33.6
(-3) 		39.2
(-1.9) 		64.5
(3) 		45
(-0.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19557
Sequence Type Exemplar sequence
Representative Public ID Y34B4A.A NCBI
Target Description Y34B4A.A /REP_DB=WormBase Gene ID /WP=CE21517 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59636.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076493 NCBI Caenorhabditis elegans Y34B4A.8 (Y34B4A.8) mRNA, complete cds. 11/11 None
GENEFINDER00000022889 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5271914:5275247:-1 11/11 None
SNAP00000022883 ENSEMBL cdna:SNAP chromosome:CEL140:X:5272148:5275048:-1 11/11 None
Y34B4A.8 ENSEMBL cdna:known chromosome:CEL140:X:5271808:5275247:-1 gene:Y34B4A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5272359-5275248(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34B4A.8
Entrez Gene 180799 Entrez gene
SwissProt Q9N467 EMBL-EBI
WormBase CE30216 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588131_AT similar to nadrin isoform 1 cfa
CANINE_2:CFA.15075.1.A1_AT similar to nadrin isoform 1 cfa
CANINE_2:CFAAFFX.26751.1.S1_AT similar to nadrin isoform 1 cfa
CANINE_2:CFAAFFX.26751.1.S1_S_AT similar to nadrin isoform 1 cfa
DROSOPHILA_2:1625747_AT dm
DROSGENOME1:150228_AT dm
HG-U133_PLUS_2:218076_S_AT Rho GTPase activating protein 17 hs
HG-U133A:218076_S_AT Rho GTPase activating protein 17 hs
HG-U133A_2:218076_S_AT Rho GTPase activating protein 17 hs
HG-U95C:57053_S_AT Rho GTPase activating protein 17 hs
HU35KSUBD:RC_AA398719_AT Rho GTPase activating protein 17 hs
U133_X3P:G8922343_3P_A_AT Rho GTPase activating protein 17 hs
HG-U95C:48944_R_AT Rho GTPase activating protein 17 hs
HG-U95C:55171_AT Rho GTPase activating protein 17 hs
HG-U95D:74974_S_AT Rho GTPase activating protein 17 hs
HG-U95C:62402_AT Rho GTPase activating protein 17 hs
HG-U95D:68183_AT Rho GTPase activating protein 17 hs
HG-U95E:71254_AT Rho GTPase activating protein 17 hs
MG-U74BV2:162784_AT Rho GTPase activating protein 17 mm
MOE430A:1426623_A_AT Rho GTPase activating protein 17 mm
MOUSE430A_2:1426623_A_AT Rho GTPase activating protein 17 mm
MOUSE430_2:1426623_A_AT Rho GTPase activating protein 17 mm
MOE430B:1442065_AT Rho GTPase activating protein 17 mm
MOUSE430_2:1442065_AT Rho GTPase activating protein 17 mm
MOE430B:1459667_AT Rho GTPase activating protein 17 (Arhgap17), mRNA mm
MOUSE430_2:1459667_AT Rho GTPase activating protein 17 (Arhgap17), mRNA mm
MU19KSUBA:TC21318_AT Rho GTPase activating protein 17 (Arhgap17), mRNA mm
MU19KSUBB:TC27144_AT Rho GTPase activating protein 17 (Arhgap17), mRNA mm
MU19KSUBC:TC41911_AT Rho GTPase activating protein 17 (Arhgap17), mRNA mm
MU19KSUBC:TC41911_G_AT Rho GTPase activating protein 17 (Arhgap17), mRNA mm
RAE230A:1387035_A_AT nadrin rn
RAT230_2:1387035_A_AT nadrin rn
Protein Similarities
Method ID Description E-Value
blast AAF59636 Hypothetical protein Y34B4A.8 [Caenorhabditis elegans] ref|NP_508894.2| Y34B4A.8 [Caenorhabditis elegans] 0.0
blast CAE68724 Hypothetical protein CBG14650 [Caenorhabditis briggsae] 0.0
blast XP_220588 PREDICTED: similar to novel protein [Rattus norvegicus] 6.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.7E-47
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.7E-47
Sequence
Target Sequence 
>C. ELEGANS:177071_AT
gatacgtcaccgccaagtggattcactcgtgcacagtcatccatcagccctaggtcgttc
cgtccaaaggaaaaagctcctccaccaccatctcagacaccatctaccagcggcgacctt
attaacttgcattcgggagatgatgacgatttttccgacgatcagtctccttcgccgttc
aatggtggctcgttaaccagaagtcatactgagcatcgtccaaatcgtccaccaccacct
tcgttccgtgcagcttgtgccgatactccgaagtctcgtcccatcagttacaacatcgca
gtcggagcgcgtccaaatgaatctcactcagtgtcccagccaccgaaaggaatgaccgtc
agcatggaagacatcatcgcagaagctccagttgctccagagcgtaaacggctcagcatt
ctgtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACGTCACCGCCAAGTGGATTCA 423 423 1309 Antisense
GTGGATTCACTCGTGCACAGTCATC 580 487 1325 Antisense
ATCTACCAGCGGCGACCTTATTAAC 526 31 1410 Antisense
GACGATTTTTCCGACGATCAGTCTC 682 377 1453 Antisense
TCCTTCGCCGTTCAATGGTGGCTCG 73 585 1476 Antisense
GAAGTCATACTGAGCATCGTCCAAA 199 337 1508 Antisense
TCGTCCCATCAGTTACAACATCGCA 383 605 1584 Antisense
TCGCAGTCGGAGCGCGTCCAAATGA 636 599 1604 Antisense
AATGAATCTCACTCAGTGTCCCAGC 173 165 1624 Antisense
GACATCATCGCAGAAGCTCCAGTTG 616 369 1678 Antisense
CGTAAACGGCTCAGCATTCTGTCGC 678 203 1711 Antisense
Sequence Source Affymetrix Proprietary Database