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[177067_s_at]

Description Y34B4A.C /REP_DB=WormBase Gene ID /WP=CE21519 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59638.1
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      6grp_highest_nonorm > 62      6grp_total > 63      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 592
1 2 3 4 range
A 282
(-0.7)
P 		507.8
(1.9)
P 		600.5
(3)
P 		86
(-3)
A 		515
B 290.1
(0)
P 		490.4
(2.2)
P 		563.5
(3)
P 		8.3
(-3)
A 		555
C 282
(-0.2)
P 		388.4
(0.9)
P 		582.6
(3)
P 		15.8
(-3)
A 		567
avr 284.7
(-0.3) 		462.2
(1.7) 		582.2
(3) 		36.7
(-3) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 226.1
(-3)
P 		475
(-0.9)
P 		936.6
(3)
P 		700.9
(1)
P 		453
(-1.1)
P 		430.6
(-1.3)
P 		711
B 272
(-3)
P 		541.3
(0.1)
P 		787
(3)
P 		497.3
(-0.4)
P 		517.8
(-0.1)
P 		433.1
(-1.1)
P 		515
C 225.1
(-3)
P 		607.9
(2.4)
P 		561.3
(1.8)
P 		648.3
(3)
P 		404.1
(-0.5)
P 		538.8
(1.4)
P 		423
avr 241.1
(-3) 		541.4
(0.5) 		761.6
(3) 		615.5
(1.3) 		458.3
(-0.5) 		467.5
(-0.4) 		521
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 102.7
(0.7)
P 		110.2
(1.1)
P 		157
(3)
P 		12.6
(-3)
A 		144
B 92.5
(1.2)
P 		121.1
(2.6)
P 		130.6
(3)
P 		1.8
(-3)
A 		129
C 93.4
(-0.3)
P 		111.7
(0.3)
P 		203
(3)
P 		2.7
(-3)
A 		200
avr 96.2
(0.4) 		114.3
(1.1) 		163.5
(3) 		5.7
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 41.7
(-3)
P 		168.9
(1.7)
P 		204
(3)
P 		177.8
(2)
P 		136.7
(0.5)
P 		104.8
(-0.7)
P 		162
B 94.6
(-3)
P 		180.2
(1.4)
P 		191.1
(2)
P 		131.7
(-1.1)
P 		210.4
(3)
P 		161.5
(0.5)
P 		116
C 83.4
(-3)
P 		185.5
(3)
P 		142.9
(0.5)
P 		130.4
(-0.2)
P 		130.7
(-0.2)
P 		180.4
(2.7)
P 		102
avr 73.2
(-3) 		178.2
(2.9) 		179.3
(3) 		146.6
(1.2) 		159.3
(1.9) 		148.9
(1.3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177067_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19558
Sequence Type Exemplar sequence
Representative Public ID Y34B4A.C NCBI
Target Description Y34B4A.C /REP_DB=WormBase Gene ID /WP=CE21519 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59638.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076491 NCBI Caenorhabditis elegans Y34B4A.5 (Y34B4A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000022895 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5255159:5260606:1 11/11 None
SNAP00000022880 ENSEMBL cdna:SNAP chromosome:CEL140:X:5257380:5260043:1 11/11 None
Y34B4A.5 ENSEMBL cdna:known chromosome:CEL140:X:5257569:5258288:1 gene:Y34B4A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5250805-5258720(+) 97.8 99.7
Public Domain and Genome References
Gene Title
Ensembl Y34B4A.5
Entrez Gene 180797 Entrez gene
SwissProt Q95Y27 EMBL-EBI
WormBase CE27399 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84603 Hypothetical protein Y34B4A.9 [Caenorhabditis elegans] ref|NP_508891.1| Y34B4A.9 [Caenorhabditis elegans] 1.0E-128
blast AAK84601 Hypothetical protein Y34B4A.5 [Caenorhabditis elegans] ref|NP_508892.1| Y34B4A.5 [Caenorhabditis elegans] 5.0E-81
blast AAK84601 Hypothetical protein Y34B4A.5 [Caenorhabditis elegans] ref|NP_508892.1| Y34B4A.5 [Caenorhabditis elegans] 5.0E-79
blast AAK84601 Hypothetical protein Y34B4A.5 [Caenorhabditis elegans] ref|NP_508892.1| Y34B4A.5 [Caenorhabditis elegans] 1.0E-70
blast CAE68719 Hypothetical protein CBG14645 [Caenorhabditis briggsae] 8.0E-59
blast CAE68722 Hypothetical protein CBG14648 [Caenorhabditis briggsae] 6.0E-44
blast CAE68719 Hypothetical protein CBG14645 [Caenorhabditis briggsae] 3.0E-31
blast CAE68719 Hypothetical protein CBG14645 [Caenorhabditis briggsae] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 4.6E-71
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 3.0E-68
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 4.6E-71
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 4.0E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022895 2 465-487,580-602
SNAP00000022880 1 183-205
Sequence
Target Sequence 
>C. ELEGANS:177067_S_AT
ggatttgcgtgcggagctggatttgaaggattctccaacaacgatgtttgtatgtcgaac
attttttccacaaaacaaactcagatcagcgattgccgtgccacatttgccaagaatttg
ttggcagattataagaaccactgcatgtacttcgagcaatataccggatgtttcaatgca
ttgttcgatcacagttcctgtaactctgagagctcttggtggggatgtgaatatgcacga
caagctggtcgagctgttctgcacgattgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTGCGTGCGGAGCTGGATTTG 288 509 2347 Antisense
AAACTCAGATCAGCGATTGCCGTGC 249 127 2423 Antisense
AAGAACCACTGCATGTACTTCGAGC 263 153 2479 Antisense
GTACTTCGAGCAATATACCGGATGT 347 459 2493 Antisense
ATACCGGATGTTTCAATGCATTGTT 519 23 2507 Antisense
ATGCATTGTTCGATCACAGTTCCTG 687 41 2522 Antisense
ACAGTTCCTGTAACTCTGAGAGCTC 687 107 2537 Antisense
CTGAGAGCTCTTGGTGGGGATGTGA 200 239 2552 Antisense
GGGGATGTGAATATGCACGACAAGC 393 497 2567 Antisense
GCACGACAAGCTGGTCGAGCTGTTC 619 315 2581 Antisense
GTCGAGCTGTTCTGCACGATTGCAG 37 475 2594 Antisense
Sequence Source Affymetrix Proprietary Database