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[177066_at]

Description Y34B4A.C /REP_DB=WormBase Gene ID /WP=CE21519 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59638.1
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 265.6
(-0.4)
P 		513.1
(2.5)
P 		552.5
(3)
P 		47.2
(-3)
A 		505
B 295.3
(-0.1)
P 		413.6
(1.1)
P 		608.6
(3)
P 		3.5
(-3)
A 		605
C 275
(0.3)
P 		469.4
(2.7)
P 		490.1
(3)
P 		12.6
(-3)
A 		478
avr 278.6
(-0.1) 		465.4
(2) 		550.4
(3) 		21.1
(-3) 		529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 252.2
(-3)
P 		457.8
(-1.1)
P 		918.8
(3)
P 		662.7
(0.7)
P 		327.1
(-2.3)
P 		356.4
(-2.1)
P 		667
B 239.9
(-3)
P 		491.5
(-0.3)
P 		797.1
(3)
P 		510.8
(-0.1)
P 		451.9
(-0.7)
P 		342.8
(-1.9)
P 		557
C 248.1
(-3)
P 		560.1
(2.1)
P 		557
(2.1)
P 		612.6
(3)
P 		499.3
(1.1)
P 		409.6
(-0.3)
P 		365
avr 246.7
(-3) 		503.1
(0) 		757.6
(3) 		595.4
(1.1) 		426.1
(-0.9) 		369.6
(-1.6) 		511
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 96.7
(0.9)
P 		111.4
(1.6)
P 		144.4
(3)
P 		6.9
(-3)
A 		138
B 94.2
(1)
P 		102.2
(1.3)
P 		141
(3)
P 		0.7
(-3)
A 		140
C 91
(0.2)
P 		134.9
(1.7)
P 		170.8
(3)
P 		2.1
(-3)
A 		169
avr 94
(0.7) 		116.2
(1.6) 		152.1
(3) 		3.2
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 46.5
(-3)
P 		162.8
(1.5)
P 		200.1
(3)
P 		168.1
(1.8)
P 		98.7
(-1)
P 		86.8
(-1.4)
P 		154
B 83.5
(-3)
P 		163.6
(1.4)
P 		193.6
(3)
P 		135.3
(-0.2)
P 		183.6
(2.5)
P 		127.8
(-0.6)
P 		110
C 91.9
(-3)
P 		170.9
(3)
P 		141.8
(0.8)
P 		123.2
(-0.6)
P 		161.6
(2.3)
P 		137.1
(0.4)
P 		79
avr 74
(-3) 		165.8
(2.3) 		178.5
(3) 		142.2
(0.9) 		148
(1.2) 		117.2
(-0.5) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19558
Sequence Type Exemplar sequence
Representative Public ID Y34B4A.C NCBI
Target Description Y34B4A.C /REP_DB=WormBase Gene ID /WP=CE21519 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59638.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076491
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022895 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5255159:5260606:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076490 1/11 Cross Hyb Matching Probes A 
NM_076491 7/11 Cross Hyb Matching Probes A 
SNAP00000022879 1/11 Cross Hyb Matching Probes None
SNAP00000022880 6/11 Cross Hyb Matching Probes None
Y34B4A.9.2 1/11 Cross Hyb Matching Probes None
Y34B4A.9.1 1/11 Cross Hyb Matching Probes None
Y34B4A.5 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5250805-5258720(+) 97.8 99.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84603 Hypothetical protein Y34B4A.9 [Caenorhabditis elegans] ref|NP_508891.1| Y34B4A.9 [Caenorhabditis elegans] 1.0E-128
blast AAK84601 Hypothetical protein Y34B4A.5 [Caenorhabditis elegans] ref|NP_508892.1| Y34B4A.5 [Caenorhabditis elegans] 5.0E-79
blast CAE68719 Hypothetical protein CBG14645 [Caenorhabditis briggsae] 8.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 3.0E-68
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 4.6E-71
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022895 2 465-487,580-602
Sequence
Target Sequence 
>C. ELEGANS:177066_AT
aatgcactttgtctgtggagctggattgcaaagaattcttgctttcgagcctgaatgtca
ccgtcaagaaattgaaaacatgtacatcaacggtataagtggtttgttcaaagtttgcga
cgcttttaacaagtactatgaatgtcttggaccagcacgacgtgactgcaccagcattag
ttatcacgtgaaagcaggtcttcgacttggagatgccgtgcaagtggtgtcaatgtacaa
acaattcggatttgcgtgcggagctggatttgaaggattctccaacaacgatgtttgtat
gtcgaacattttttccacaaaacaaactcagatcagcgattgccgtgccacatttgccaa
gaatttgttggcagattataagaaccactgcatgtacttcgagcaatataccggatgttt
caatgcattgttcgatcacagttcctgtaactctgagagctcttggtggggatgtgaata
tgcacgacaagctggtcgagctgttctgcacgattgcagtcttcaatgctcaagcaattt
ttttagcacgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCACTTTGTCTGTGGAGCTGGA 598 165 2100 Antisense
AAGAATTCTTGCTTTCGAGCCTGAA 483 151 2130 Antisense
TTTCGAGCCTGAATGTCACCGTCAA 154 671 2142 Antisense
GTTTGCGACGCTTTTAACAAGTACT 208 451 2212 Antisense
ATGTCTTGGACCAGCACGACGTGAC 129 47 2241 Antisense
ACGACGTGACTGCACCAGCATTAGT 292 91 2256 Antisense
ATCACGTGAAAGCAGGTCTTCGACT 239 27 2282 Antisense
AGGTCTTCGACTTGGAGATGCCGTG 85 57 2295 Antisense
TGCCGTGCAAGTGGTGTCAATGTAC 284 579 2313 Antisense
CAAACAATTCGGATTTGCGTGCGGA 99 189 2337 Antisense
CTCAAGCAATTTTTTTAGCACGTTT 75 227 2628 Antisense
Sequence Source Affymetrix Proprietary Database