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[177065_at] vit-1

Description K09F5.2 /REP_DB=WormBase Gene ID /WP=CE04746 /GEN=vit-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=vit-1
Cluster 6grp_total > 94      4grp_total > 25      6grp_cgc > 89      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 32.5
(2.8)
A 		16
(-1.1)
A 		33.3
(3)
A 		8
(-3)
A 		25
B 23.4
(-3)
A 		50.3
(1.1)
A 		62.5
(3)
A 		50.5
(1.2)
A 		39
C 55.5
(-0.7)
A 		66.2
(0.6)
A 		34.9
(-3)
A 		87.8
(3)
A 		53
avr 37.1
(-3) 		44.2
(0.6) 		43.6
(0.3) 		48.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1285
1 2 3 4 5 6 range
A 20.3
(-3)
A 		36.8
(-2.9)
A 		59.7
(-2.8)
A 		43.9
(-2.9)
A 		1074.3
(3)
P 		609.3
(0.4)
P 		1054
B 27.2
(-2.9)
A 		46.9
(-2.8)
A 		17.9
(-3)
A 		12.7
(-3)
A 		934.3
(3)
P 		747.2
(1.8)
P 		922
C 19.4
(-3)
A 		27.2
(-2.9)
A 		26.5
(-2.9)
A 		15.5
(-3)
A 		1297.6
(3)
P 		626.6
(-0.1)
P 		1282
avr 22.3
(-3) 		37
(-2.9) 		34.7
(-2.9) 		24
(-3) 		1102.1
(3) 		661
(0.5) 		1080
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.8
(3)
A 		3.5
(-1.7)
A 		8.7
(1.2)
A 		1.2
(-3)
A 		11
B 7.5
(-3)
A 		12.4
(1.2)
A 		14.5
(3)
A 		10.8
(-0.2)
A 		7
C 18.4
(2.5)
A 		19
(3)
A 		12.2
(-3)
A 		14.8
(-0.7)
A 		7
avr 12.6
(3) 		11.6
(1.4) 		11.8
(1.7) 		8.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 417
1 2 3 4 5 6 range
A 3.7
(-3)
A 		13.1
(-2.8)
A 		13
(-2.8)
A 		11.1
(-2.9)
A 		324.2
(3)
P 		148.3
(-0.3)
P 		321
B 9.5
(-2.9)
A 		15.6
(-2.8)
A 		4.3
(-3)
A 		3.4
(-3)
A 		379.6
(3)
P 		278.6
(1.4)
P 		376
C 7.2
(-2.9)
A 		8.3
(-2.9)
A 		6.7
(-2.9)
A 		3.1
(-3)
A 		419.9
(3)
P 		209.7
(-0)
P 		417
avr 6.8
(-3) 		12.3
(-2.9) 		8
(-3) 		5.9
(-3) 		374.6
(3) 		212.2
(0.4) 		369
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17274
Sequence Type Exemplar sequence
Representative Public ID K09F5.2 NCBI
Target Description K09F5.2 /REP_DB=WormBase Gene ID /WP=CE04746 /GEN=vit-1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=vit-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076904 NCBI Caenorhabditis elegans VITellogenin structural genes (yolk protein genes) family member (vit-1) (vit-1) mRNA, complete cds. 11/11 None
SNAP00000026492 ENSEMBL cdna:SNAP chromosome:CEL140:X:7727840:7732882:1 11/11 None
GENEFINDER00000026495 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7727840:7732882:1 11/11 None
K09F5.2 ENSEMBL cdna:known chromosome:CEL140:X:7727840:7732984:1 gene:K09F5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7727838-7732881(+) 99.96 99.96
chrX:5101010-5105930(+) 91.86 91.86
Public Domain and Genome References
Gene Title vit-1
Gene Symbol vit-1
Ensembl K09F5.2
Entrez Gene 181034 Entrez gene
SwissProt P55155 EMBL-EBI
WormBase CE04746 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6869 lipid transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5319 lipid transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_509305 VITellogenin structural genes (yolk protein genes) family member (vit-1) [Caenorhabditis elegans] gb|AAB52675.1| Vitellogenin structural genes (yolk protein genes) protein 1 [Caenorhabditis elegans] sp|P55155|VIT1_CAEEL Vitellogenin 1 precursor 0.0
blast NP_508868 C42D8.2 [Caenorhabditis elegans] gb|AAA98720.1| Vitellogenin structural genes (yolk protein genes) protein 2 [Caenorhabditis elegans] 0.0
blast P05690 Vitellogenin 2 precursor emb|CAA39669.1| vitellogenin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 6.6E-37
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177065_AT
gatattgttattgagctaccagaaggagaggttcgctttgacggatacaccatcaagact
caacttccatcctacagccgcaagaaccaactttgcggactttgcggaaacaacgatgat
gagtccaccaacgagttttacacttccgataacaccgaaaccaaagacatcgaagagttc
caccgatcttaccttctcaagaacgaggaatgtgaagccgaggaggagcgtctttctgag
aagaagaactacagaaagtacgacgagagaaagtacgaatctgaagagtattcttttgag
gagacctatgattatgagcaggaaaacaccaataaaaagcaaaagaaccagagaagccag
aagaaatccgatcttgtcgagaagactcaaatcaaggagttttcccaccgcatctgcttc
tccgttgagccagtagccgagtgccgtcgtcgtggatacgaagctgtggagcaacaacaa
aggaaagttcgcttcacctgcttgccacgtcacagttctgaagccagacgtctggtgaag
gaggctcgtcaaggaacagttcaacttgatgatcacaagatttcctttgtccactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTGTTATTGAGCTACCAGAAG 487 427 4234 Antisense
ATCGAAGAGTTCCACCGATCTTACC 409 37 4402 Antisense
TGAGGAGACCTATGATTATGAGCAG 377 567 4530 Antisense
GACTCAAATCAAGGAGTTTTCCCAC 269 367 4617 Antisense
AGTGCCGTCGTCGTGGATACGAAGC 209 61 4673 Antisense
AAAGGAAAGTTCGCTTCACCTGCTT 282 113 4712 Antisense
GCTTGCCACGTCACAGTTCTGAAGC 248 307 4733 Antisense
GTCACAGTTCTGAAGCCAGACGTCT 689 463 4742 Antisense
CCAGACGTCTGGTGAAGGAGGCTCG 420 267 4757 Antisense
GGAGGCTCGTCAAGGAACAGTTCAA 435 515 4773 Antisense
ATCACAAGATTTCCTTTGTCCACTC 438 27 4805 Antisense
Sequence Source Affymetrix Proprietary Database