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[177063_at]

Description Y94H6A.I /REP_DB=WormBase Gene ID /WP=CE25636 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60895.1
Cluster 6grp_total > 93      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 2.8
(-3)
A 		5.4
(0.3)
A 		3.2
(-2.5)
A 		7.5
(3)
A 		5
B 3.5
(-3)
A 		17.1
(-0.1)
A 		31.9
(3)
A 		31.5
(2.9)
A 		28
C 4.2
(-1.7)
A 		6
(1.1)
A 		3.3
(-3)
A 		7.3
(3)
A 		4
avr 3.5
(-3) 		9.5
(0) 		12.8
(1.7) 		15.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 2.3
(-3)
A 		51.6
(2.6)
A 		26.9
(-0.2)
A 		9.4
(-2.2)
A 		55.2
(3)
A 		2.3
(-3)
A 		53
B 13.7
(-1.5)
A 		10
(-2)
A 		10.7
(-1.9)
A 		3.1
(-3)
A 		45.9
(3)
A 		8.4
(-2.3)
A 		43
C 3.1
(-3)
A 		8.8
(-1.9)
A 		11.5
(-1.4)
A 		35.5
(3)
A 		9.3
(-1.9)
A 		20.6
(0.2)
A 		32
avr 6.4
(-3) 		23.5
(0.4) 		16.4
(-1) 		16
(-1.1) 		36.8
(3) 		10.4
(-2.2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1
(0)
A 		1.2
(3)
A 		0.8
(-3)
A 		1.1
(1.5)
A 		0
B 1.1
(-3)
A 		4.2
(-0)
A 		7.4
(3)
A 		6.7
(2.3)
A 		6
C 1.4
(-0)
A 		1.7
(3)
A 		1.1
(-3)
A 		1.2
(-2)
A 		1
avr 1.2
(-3) 		2.4
(0.8) 		3.1
(3) 		3
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.4
(-3)
A 		18.4
(3)
A 		5.9
(-1.2)
A 		2.4
(-2.3)
A 		16.6
(2.4)
A 		0.6
(-2.9)
A 		18
B 4.8
(-1.7)
A 		3.3
(-2.2)
A 		2.6
(-2.4)
A 		0.8
(-3)
A 		18.6
(3)
A 		3.1
(-2.2)
A 		18
C 1.2
(-3)
A 		2.7
(-1.5)
A 		2.9
(-1.3)
A 		7.1
(3)
A 		3
(-1.2)
A 		6.9
(2.8)
A 		6
avr 2.1
(-3) 		8.1
(0.4) 		3.8
(-2) 		3.4
(-2.3) 		12.7
(3) 		3.5
(-2.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19275
Sequence Type Exemplar sequence
Representative Public ID Y94H6A.I NCBI
Target Description Y94H6A.I /REP_DB=WormBase Gene ID /WP=CE25636 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60895.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067848 NCBI Caenorhabditis elegans Y94H6A.2 (Y94H6A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000003295 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2727169:2732401:1 11/11 None
Y94H6A.2 ENSEMBL cdna:known chromosome:CEL140:IV:2730488:2732401:1 gene:Y94H6A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003285 3/11 Cross Hyb Matching Probes None
SNAP00000003286 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2730493-2732407(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y94H6A.2
Entrez Gene 190800 Entrez gene
SwissProt Q9N2W4 EMBL-EBI
WormBase CE25636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60895 Hypothetical protein Y94H6A.2 [Caenorhabditis elegans] ref|NP_500249.1| Y94H6A.2 [Caenorhabditis elegans] 0.0
blast CAE58174 Hypothetical protein CBG01266 [Caenorhabditis briggsae] 2.0E-54
blast CAE58174 Hypothetical protein CBG01266 [Caenorhabditis briggsae] 4.0E-50
blast CAB07684 Hypothetical protein W04G5.8 [Caenorhabditis elegans] ref|NP_492972.1| W04G5.8 [Caenorhabditis elegans] 6.0E-46
blast CAB07684 Hypothetical protein W04G5.8 [Caenorhabditis elegans] ref|NP_492972.1| W04G5.8 [Caenorhabditis elegans] 9.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177063_AT
accgtcaagatcactcgtactgggacgatggagtcttaagtttaatccataatgtgcaag
acaataatgagggaagtgaaaatatacgaaatattttgactaaagaattgggcaagatca
tgacaaaccacaaattttacgtgatcgtctacgatttctgtgacggttcatctgaggagt
accaattcacttcatacagctatttcaaacgcaattttaaatcttctttcaatcgaaacg
ggtgcaatgcttttgttttacgaagcctcagaacccaagattgcaaaaggcacgaggaga
accttcaaagaaagctgcaagctgcccttccaatggaatacgactacagattcaaattga
ttgattatgcggaaaagctttgcaaacggttcggcgatgaatgtggacttgtgttgatca
ttcggcgcaacactactatctttttcggaccggtgaactggtacttaaatgagtattcaa
aaagacccggcgccttgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGTCAAGATCACTCGTACTGGGA 494 87 533 Antisense
ACGATTTCTGTGACGGTTCATCTGA 605 93 683 Antisense
GGAGTACCAATTCACTTCATACAGC 668 517 708 Antisense
CGGGTGCAATGCTTTTGTTTTACGA 515 243 771 Antisense
GAAGCCTCAGAACCCAAGATTGCAA 371 345 794 Antisense
GCAAGCTGCCCTTCCAATGGAATAC 82 321 849 Antisense
AAAGCTTTGCAAACGGTTCGGCGAT 296 123 906 Antisense
TGGACTTGTGTTGATCATTCGGCGC 573 547 936 Antisense
TGATCATTCGGCGCAACACTACTAT 69 565 947 Antisense
CTATCTTTTTCGGACCGGTGAACTG 600 223 968 Antisense
TCAAAAAGACCCGGCGCCTTGATTG 44 629 1009 Antisense
Sequence Source Affymetrix Proprietary Database