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[177062_at]

Description Y34B4A.G /REP_DB=WormBase Gene ID /WP=CE21523 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59642.1
Cluster 4grp_high_8_8 > 01      6grp_total > 23      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 224.9
(3)
P 		90.3
(-3)
P 		141.7
(-0.7)
P 		191
(1.5)
A 		135
B 183.6
(3)
P 		160.3
(1.5)
A 		180.1
(2.8)
A 		91
(-3)
M 		93
C 230.3
(3)
P 		167.4
(-1.6)
M 		148.3
(-3)
M 		230.6
(3)
P 		82
avr 212.9
(3) 		139.3
(-3) 		156.7
(-1.6) 		170.9
(-0.4) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 163.2
(0.2)
M 		186.3
(3)
P 		148.5
(-1.5)
P 		164.8
(0.4)
P 		136.2
(-3)
P 		179.5
(2.2)
A 		50
B 145.5
(1.7)
P 		166.4
(3)
A 		159.7
(2.6)
P 		131
(0.8)
A 		107.7
(-0.7)
P 		71.6
(-3)
A 		95
C 171.5
(3)
P 		103.8
(-2.6)
P 		169.5
(2.8)
P 		154.4
(1.6)
M 		98.9
(-3)
P 		133.4
(-0.1)
A 		73
avr 160.1
(3) 		152.2
(2) 		159.2
(2.9) 		150.1
(1.7) 		114.3
(-3) 		128.2
(-1.2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 81.9
(3)
P 		19.6
(-3)
P 		37
(-1.3)
P 		28
(-2.2)
A 		62
B 58.5
(3)
P 		39.6
(0.1)
A 		41.7
(0.4)
A 		19.4
(-3)
M 		39
C 76.2
(3)
P 		48.1
(-1.5)
M 		51.7
(-0.9)
M 		38.9
(-3)
P 		37
avr 72.2
(3) 		35.8
(-2) 		43.5
(-1) 		28.8
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 30.1
(-3)
M 		66.3
(3)
P 		32.3
(-2.6)
P 		41.8
(-1.1)
P 		41.1
(-1.2)
P 		43.7
(-0.7)
A 		36
B 50.6
(2)
P 		55.4
(3)
A 		38.8
(-0.5)
P 		34.7
(-1.3)
A 		43.7
(0.6)
P 		26.7
(-3)
A 		29
C 63.6
(3)
P 		31.7
(-2.9)
P 		43.1
(-0.8)
P 		31.1
(-3)
M 		32
(-2.8)
P 		44.6
(-0.5)
A 		33
avr 48.1
(1.8) 		51.1
(3) 		38.1
(-2.1) 		35.9
(-3) 		38.9
(-1.8) 		38.3
(-2.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19561
Sequence Type Exemplar sequence
Representative Public ID Y34B4A.G NCBI
Target Description Y34B4A.G /REP_DB=WormBase Gene ID /WP=CE21523 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59642.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F32A6.3 ENSEMBL cdna:known chromosome:CEL140:X:5283796:5289659:1 gene:F32A6.3 A 
GENEFINDER00000022892 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5279588:5284535:1 None
SNAP00000022887 ENSEMBL cdna:SNAP chromosome:CEL140:X:5283801:5284453:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5283434-5284092(+) 100.0 100.0
Public Domain and Genome References
Ensembl F32A6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81388 Related to yeast vacuolar protein sorting factor protein 41, isoform a [Caenorhabditis elegans] ref|NP_508898.2| related to yeast Vacuolar Protein Sorting factor family member (vps-41) [Caenorhabditis elegans] sp|Q19954|VPS41_CAEEL Vacuolar assembly protein VPS41 homolog 0.0
blast T16236 hypothetical protein F32A6.3 - Caenorhabditis elegans 0.0
blast AAZ91350 Related to yeast vacuolar protein sorting factor protein 41, isoform b [Caenorhabditis elegans] 0.0
blast AAF59641 Hypothetical protein Y34B4A.2 [Caenorhabditis elegans] ref|NP_508896.1| Y34B4A.2 [Caenorhabditis elegans] 1.0E-168
blast CAE68726 Hypothetical protein CBG14652 [Caenorhabditis briggsae] 1.0E-131
blast CAB03420 Hypothetical protein T23G11.7a [Caenorhabditis elegans] ref|NP_492138.1| T23G11.7a [Caenorhabditis elegans] 3.0E-56
blast CAE68727 Hypothetical protein CBG14653 [Caenorhabditis briggsae] 2.0E-33
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 6.40000009536743
Pfam IPR000547 EMBL-EBI 7-Fold repeat in clathrin and VPS proteins 4.6E-6
Sequence
Target Sequence 
>C. ELEGANS:177062_AT
tacaagtagtccttcaagccttctcgtcaacttccaaccaccacaagatgctttacctac
agacctaccggtaccatgatgatatccatgttgacttactgcacacatttcatgttgcat
tgtttgggtttatttattttcagtgtttgaaaaaaaaacgaatttatttttttatttgta
tttatattttgaaactctatcacatctactacaacaagttctcagaaccaatggacgaaa
cacacgagaatgaggcgtccgattcctttgatccagtgttcgaaaattcctaccatgatg
acgtcacattcaacacagaagacgacgatgagccaccattagagcctcgattcaaatatg
agcgtctgaaaggagaggaaacacttccatttatgaaaacggcaactttcacgtcaatcg
atctgcacgataaatttattgcaattggtacggctactggtctcatttacattctcgatc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAGTAGTCCTTCAAGCCTTCTC 37 641 92 Antisense
TTCCAACCACCACAAGATGCTTTAC 439 695 123 Antisense
TTACCTACAGACCTACCGGTACCAT 98 665 144 Antisense
TGATATCCATGTTGACTTACTGCAC 77 565 171 Antisense
GAAACTCTATCACATCTACTACAAC 299 357 282 Antisense
CGAGAATGAGGCGTCCGATTCCTTT 562 249 336 Antisense
AATTCCTACCATGATGACGTCACAT 103 177 376 Antisense
GATGAGCCACCATTAGAGCCTCGAT 594 411 418 Antisense
GGCAACTTTCACGTCAATCGATCTG 307 535 492 Antisense
AATTGGTACGGCTACTGGTCTCATT 199 179 534 Antisense
TGGTCTCATTTACATTCTCGATCAT 228 553 549 Antisense
Sequence Source Affymetrix Proprietary Database