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[177061_at]

Description M18.6 /REP_DB=WormBase Gene ID /WP=CE06197 /TR=Q21558 /GB=CAA92828.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 94      6grp_total > 85      4grp_total > 33      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 291.4
(-3)
P 		293.8
(-2.7)
P 		343
(3)
P 		310.5
(-0.8)
P 		52
B 283.3
(-3)
P 		362.8
(3)
P 		359.2
(2.7)
P 		358.5
(2.7)
P 		80
C 285.5
(-3)
P 		359.2
(3)
P 		288
(-2.8)
P 		324.1
(0.1)
P 		74
avr 286.7
(-3) 		338.6
(3) 		330.1
(2) 		331
(2.1) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 567
1 2 3 4 5 6 range
A 218.8
(-3)
P 		388.4
(-1.2)
P 		429
(-0.8)
P 		675
(1.8)
P 		516.1
(0.1)
P 		785.7
(3)
P 		567
B 309.7
(-3)
P 		342.3
(-2.5)
P 		394.9
(-1.6)
P 		475.2
(-0.3)
P 		513.8
(0.4)
P 		672.6
(3)
P 		363
C 408.8
(-1.2)
P 		287.6
(-3)
P 		507.1
(0.2)
P 		579.6
(1.3)
P 		650.2
(2.4)
P 		693.7
(3)
P 		406
avr 312.4
(-3) 		339.4
(-2.6) 		443.7
(-1.1) 		576.6
(0.9) 		560
(0.7) 		717.3
(3) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 106.1
(3)
P 		63.8
(-1.2)
P 		89.7
(1.4)
P 		45.5
(-3)
P 		61
B 90.3
(3)
P 		89.6
(2.7)
P 		83.2
(-0.1)
P 		76.4
(-3)
P 		14
C 94.5
(1.9)
P 		103.3
(3)
P 		100.4
(2.6)
P 		54.7
(-3)
P 		49
avr 97
(3) 		85.6
(1.2) 		91.1
(2.1) 		58.9
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 40.3
(-3)
P 		138.1
(0.9)
P 		93.4
(-0.9)
P 		171.2
(2.2)
P 		155.7
(1.6)
P 		191.3
(3)
P 		151
B 107.8
(-2.5)
P 		113.9
(-2.3)
P 		95.9
(-3)
P 		125.9
(-1.8)
P 		208.7
(1.4)
P 		250.8
(3)
P 		155
C 151.5
(-0.4)
P 		87.8
(-3)
P 		129.1
(-1.3)
P 		116.6
(-1.8)
P 		210.4
(2.1)
P 		232.2
(3)
P 		144
avr 99.9
(-3) 		113.3
(-2.4) 		106.1
(-2.7) 		137.9
(-1.2) 		191.6
(1.4) 		224.8
(3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8395
Sequence Type Exemplar sequence
Representative Public ID M18.6 NCBI
Target Description M18.6 /REP_DB=WormBase Gene ID /WP=CE06197 /TR=Q21558 /GB=CAA92828.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069899 NCBI Caenorhabditis elegans M18.6 (M18.6) mRNA, complete cds. 11/11 None
SNAP00000023285 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12121331:12122736:1 10/11 None
GENEFINDER00000023295 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12121331:12124568:1 10/11 None
M18.6 ENSEMBL cdna:known chromosome:CEL140:IV:12121346:12122736:1 gene:M18.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12121351-12122742(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M18.6
Entrez Gene 187461 Entrez gene
SwissProt Q21558 EMBL-EBI
WormBase CE35592 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6510 ATP-dependent proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4176 ATP-dependent peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92828 Hypothetical protein M18.6 [Caenorhabditis elegans] ref|NP_502300.2| M18.6 [Caenorhabditis elegans] 0.0
blast CAE62186 Hypothetical protein CBG06233 [Caenorhabditis briggsae] 1.0E-144
blast CAA92829 Hypothetical protein M18.7 [Caenorhabditis elegans] ref|NP_502301.1| Ref/ALY RNA export adaptor family member (aly-3) [Caenorhabditis elegans] 1.0E-98
blast AAL56423 similar to x0001 [Oikopleura dioica] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003111 EMBL-EBI Peptidase S16, lon N-terminal 1.8E-92
Pfam IPR003111 EMBL-EBI Peptidase S16, lon N-terminal 1.8E-92
Sequence
Target Sequence 
>C. ELEGANS:177061_AT
aattgctaccagacgtcgaacttccatcgttacttccatcatttattccgaaatatgcaa
tacatttacctgctcacgaaaaacgttcaattgcaacccgaatcaatggatatccattca
atgctattcgagatgttacagaaagtgctgtgaatgaatgcgtgggactactttcaggaa
tgcttggagatgacactgtgagacaagctaaagatcgtggcctcacatacttcagctatt
ttgctgcaaagcatattttctctaatcggctaactgagtacagtctcttgaaagaagatt
cagcgaacggtcgtatagttgctgctctgaagtacgcatggattatcattcagtgctcca
gatgtcatgaacaccttggatgggaatatatcagcatgactcgtgaaccacgacgctttt
tcggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCTACCAGACGTCGAACTTCC 201 179 488 Antisense
TTCCATCGTTACTTCCATCATTTAT 236 701 509 Antisense
AAACGTTCAATTGCAACCCGAATCA 112 127 568 Antisense
GCGTGGGACTACTTTCAGGAATGCT 259 291 647 Antisense
AAGATCGTGGCCTCACATACTTCAG 135 155 698 Antisense
GCATATTTTCTCTAATCGGCTAACT 612 305 738 Antisense
GCGAACGGTCGTATAGTTGCTGCTC 174 289 790 Antisense
GTTGCTGCTCTGAAGTACGCATGGA 159 439 805 Antisense
ATCATTCAGTGCTCCAGATGTCATG 315 31 832 Antisense
ATATCAGCATGACTCGTGAACCACG 618 19 875 Antisense
GTGAACCACGACGCTTTTTCGGAAT 170 449 890 Antisense
Sequence Source Affymetrix Proprietary Database