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[177060_s_at]

Description Y46C8AL.H /REP_DB=WormBase Gene ID /WP=CE25295 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60602.1
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      6grp_highest_nonorm > 33      6grp_total > 51      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1928
1 2 3 4 range
A 1818.2
(3)
P 		1023.3
(0.3)
P 		1204.7
(0.9)
P 		47.6
(-3)
A 		1771
B 1558
(3)
P 		1290.5
(2)
P 		1256.6
(1.8)
P 		26.4
(-3)
A 		1532
C 1954.7
(3)
P 		1264.8
(0.8)
P 		1407.9
(1.3)
P 		32.7
(-3)
A 		1922
avr 1777
(3) 		1192.9
(1) 		1289.7
(1.3) 		35.6
(-3) 		1741

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3065
1 2 3 4 5 6 range
A 1530.7
(-0.1)
P 		1322
(-0.7)
P 		2636.1
(3)
P 		1839.7
(0.8)
P 		694.3
(-2.5)
P 		506.5
(-3)
P 		2130
B 2276.8
(0.3)
P 		1578.4
(-1.2)
P 		3571.8
(3)
P 		2361.6
(0.5)
P 		788.6
(-2.8)
P 		709.8
(-3)
P 		2862
C 1800.7
(1.6)
P 		1397
(-0.2)
P 		2103.5
(3)
P 		2093.6
(3)
P 		773.8
(-3)
P 		868.6
(-2.6)
P 		1330
avr 1869.4
(0.4) 		1432.5
(-0.9) 		2770.5
(3) 		2098.3
(1.1) 		752.2
(-2.8) 		695
(-3) 		2076
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 657
1 2 3 4 range
A 662
(3)
P 		222.1
(-1)
P 		314.9
(-0.2)
P 		7
(-3)
A 		655
B 496.8
(3)
P 		318.7
(0.8)
P 		291.2
(0.5)
P 		5.6
(-3)
A 		491
C 647.1
(3)
P 		363.6
(0.3)
P 		490.7
(1.5)
P 		5.5
(-3)
A 		642
avr 602
(3) 		301.5
(-0) 		365.6
(0.6) 		6
(-3) 		596

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 744
1 2 3 4 5 6 range
A 282.2
(-0.9)
P 		470.2
(1.6)
P 		574.1
(3)
P 		466.6
(1.6)
P 		209.5
(-1.9)
P 		123.3
(-3)
P 		451
B 792.2
(2.3)
P 		525.4
(-0.4)
P 		867.3
(3)
P 		625.5
(0.6)
P 		320.4
(-2.4)
P 		264.7
(-3)
P 		603
C 667.4
(3)
P 		426.3
(-0.5)
P 		535.4
(1.1)
P 		421
(-0.5)
P 		250.4
(-3)
P 		290.8
(-2.4)
P 		417
avr 580.6
(1.9) 		474
(0.4) 		658.9
(3) 		504.4
(0.9) 		260.1
(-2.5) 		226.3
(-3) 		433
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177060_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19356
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.H NCBI
Target Description Y46C8AL.H /REP_DB=WormBase Gene ID /WP=CE25295 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60602.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068041 NCBI Caenorhabditis elegans Y46C8AL.5 (Y46C8AL.5) mRNA, complete cds. 11/11 A 
SNAP00000030669 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3944810:3947199:1 11/11 None
GENEFINDER00000030679 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3943864:3947275:1 11/11 None
Y46C8AL.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:3944801:3947323:1 gene:Y46C8AL.5 11/11 None
Y46C8AL.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:3944810:3947356:1 gene:Y46C8AL.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3943477-3947205(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46C8AL.5
Entrez Gene 177152 Entrez gene
SwissProt Q9N3W5 EMBL-EBI
WormBase CE36742 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60602 Hypothetical protein Y46C8AL.5 [Caenorhabditis elegans] ref|NP_500442.3| Y46C8AL.5 [Caenorhabditis elegans] 0.0
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 0.0
blast E88656 protein F56D6.2 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030679 1 56-73
Sequence
Target Sequence 
>C. ELEGANS:177060_S_AT
acgagatgttacttacctaataatggtttctcttcaaagtcatttgccgatcagcaatgt
tcaatctgcaaagcttaactggtttaacccaccttttccgcaaggcgctttatcaatgca
accatcggaatgggcatatacaaatagtaattccggcggaaatcgtaggataattgaccc
ggccgtctataacatgaccattgactatatctacacgaacaccgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGATGTTACTTACCTAATAATG 651 77 1518 Antisense
TAATAATGGTTTCTCTTCAAAGTCA 17 631 1535 Antisense
GTCATTTGCCGATCAGCAATGTTCA 564 467 1556 Antisense
CAATCTGCAAAGCTTAACTGGTTTA 287 165 1579 Antisense
CCTTTTCCGCAAGGCGCTTTATCAA 628 267 1609 Antisense
CAAGGCGCTTTATCAATGCAACCAT 669 183 1618 Antisense
AATGCAACCATCGGAATGGGCATAT 498 165 1632 Antisense
ATCGTAGGATAATTGACCCGGCCGT 666 31 1679 Antisense
TAATTGACCCGGCCGTCTATAACAT 336 633 1688 Antisense
ACATGACCATTGACTATATCTACAC 668 105 1709 Antisense
GACTATATCTACACGAACACCGATG 699 369 1720 Antisense
Sequence Source Affymetrix Proprietary Database