[Home] | [Total List]

[177058_s_at]

Description R17.2 /REP_DB=WormBase Gene ID /WP=CE16315 /TR=O18005 /GB=CAB07271.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 612.5
(3)
P 		456.1
(0.1)
P 		399.3
(-0.9)
P 		285.5
(-3)
P 		327
B 801
(3)
P 		452.5
(-1.1)
P 		455.4
(-1)
P 		287.9
(-3)
P 		513
C 718.3
(3)
P 		415.3
(-1.9)
P 		503.3
(-0.5)
P 		344.7
(-3)
P 		374
avr 710.6
(3) 		441.3
(-1) 		452.7
(-0.8) 		306
(-3) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 478.2
(-1.8)
P 		458.8
(-2.5)
P 		524.1
(-0.2)
P 		479.1
(-1.8)
P 		444.8
(-3)
P 		616.5
(3)
P 		172
B 540.3
(2.8)
P 		429.2
(-3)
P 		521.7
(1.8)
P 		432.1
(-2.8)
P 		455.3
(-1.6)
P 		544
(3)
P 		115
C 545.5
(-0.5)
P 		450.3
(-2.3)
P 		414.7
(-3)
P 		421.7
(-2.9)
P 		436.3
(-2.6)
P 		733.5
(3)
P 		319
avr 521.3
(-0.5) 		446.1
(-2.9) 		486.8
(-1.6) 		444.3
(-3) 		445.5
(-3) 		631.3
(3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 223
(3)
P 		99
(-1.1)
P 		104.4
(-0.9)
P 		41.8
(-3)
P 		181
B 255.4
(3)
P 		111.8
(-1.4)
P 		105.5
(-1.6)
P 		61.4
(-3)
P 		194
C 237.8
(3)
P 		119.4
(-1)
P 		175.4
(0.9)
P 		58.1
(-3)
P 		180
avr 238.7
(3) 		110.1
(-1.2) 		128.4
(-0.6) 		53.8
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 88.1
(-3)
P 		163.2
(3)
P 		114.1
(-0.9)
P 		121.5
(-0.3)
P 		134.2
(0.7)
P 		150.1
(2)
P 		75
B 188
(2)
P 		142.9
(-1.1)
P 		126.7
(-2.2)
P 		114.4
(-3)
P 		185
(1.8)
P 		202.9
(3)
P 		89
C 202.2
(1.4)
P 		137.4
(-1)
P 		105.6
(-2.2)
P 		84.8
(-3)
P 		141.2
(-0.9)
P 		245.6
(3)
P 		161
avr 159.4
(0.4) 		147.8
(-0.3) 		115.5
(-2.4) 		106.9
(-3) 		153.5
(0) 		199.5
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177058_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7605
Sequence Type Exemplar sequence
Representative Public ID R17.2 NCBI
Target Description R17.2 /REP_DB=WormBase Gene ID /WP=CE16315 /TR=O18005 /GB=CAB07271.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066987 NCBI Caenorhabditis elegans R17.2 (R17.2) mRNA, complete cds. 11/11 None
SNAP00000033118 ENSEMBL cdna:SNAP chromosome:CEL140:III:10839943:10844788:-1 11/11 None
R17.2 ENSEMBL cdna:known chromosome:CEL140:III:10839900:10844812:-1 gene:R17.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033124 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10839921-10844784(-) 99.26 100.0
Public Domain and Genome References
Gene Title
Ensembl R17.2
Entrez Gene 176514 Entrez gene
SwissProt O18005 EMBL-EBI
WormBase CE16315 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07271 Hypothetical protein R17.2 [Caenorhabditis elegans] ref|NP_499388.1| R17.2 [Caenorhabditis elegans] 0.0
blast CAE71394 Hypothetical protein CBG18301 [Caenorhabditis briggsae] 0.0
blast XP_797301 PREDICTED: similar to 2-phosphodiesterase [Strongylocentrotus purpuratus] 4.0E-36
blast XP_797301 PREDICTED: similar to 2-phosphodiesterase [Strongylocentrotus purpuratus] 3.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 9.7E-31
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:177058_S_AT
ggagttgccgagctagctagtggagatattctagggatccttgagacatcagaagaatcg
aaagaacgattttcaactcgtcccacagttttgcaaattgtggttctaaaagattccaga
accgggaaacttctagtctgcggcaatacacatttacaccataatcctatagatgaacac
gtgaaagtgctacaagcattgacttgtacacggaaacttttggaaatttacgaggaaact
agagaattgaataaaggaattgaggttcttgtcttatttggaggagatttcaatagtaca
cccaatggagctgtgtttaatttgatgagcatgggtaatctcccaaaagaagacgccgtg
tggaattgcgactcaaaaattactccacaggatataaaaatcgataagaaaatggattgt
ctcactggaacaccagaatatacaaattacacggcaagtagccaaaaggatggatttgtc
ggatgtttggattatatttggggagttggagccacttcaatccgccactgtccacttcca
agccacgaaaaagtgataaaatacacagcactgccgtctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTGCCGAGCTAGCTAGTGGAG 118 519 1270 Antisense
TTCAACTCGTCCCACAGTTTTGCAA 333 685 1341 Antisense
ACCGGGAAACTTCTAGTCTGCGGCA 388 1 1390 Antisense
GTCTGCGGCAATACACATTTACACC 209 471 1405 Antisense
GAGGTTCTTGTCTTATTTGGAGGAG 683 401 1531 Antisense
GACGCCGTGTGGAATTGCGACTCAA 522 381 1621 Antisense
GCGACTCAAAAATTACTCCACAGGA 573 287 1637 Antisense
ATGGATTGTCTCACTGGAACACCAG 605 51 1681 Antisense
TGGGGAGTTGGAGCCACTTCAATCC 613 543 1768 Antisense
GTCCACTTCCAAGCCACGAAAAAGT 336 465 1799 Antisense
TAAAATACACAGCACTGCCGTCTCC 619 639 1826 Antisense
Sequence Source Affymetrix Proprietary Database