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[177056_at]

Description Y19D10B.D /REP_DB=WormBase Gene ID /WP=CE25227 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59427.1
Cluster 6grp_high1_10_10 > 55      6grp_total > 66      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 41.8
(-1.8)
A 		22
(-3)
A 		46.1
(-1.5)
A 		119.5
(3)
P 		98
B 50.4
(-3)
A 		65
(-0.1)
A 		55.8
(-1.9)
A 		80.6
(3)
A 		30
C 34.9
(-3)
A 		45.9
(-1.6)
A 		36.9
(-2.8)
A 		83.1
(3)
A 		48
avr 42.4
(-3) 		44.3
(-2.8) 		46.3
(-2.6) 		94.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 50.2
(-0.1)
A 		27.9
(-3)
A 		47.2
(-0.5)
M 		63.6
(1.7)
P 		50.6
(-0)
A 		73.8
(3)
A 		46
B 60.7
(0.5)
P 		70.7
(1.7)
A 		61.7
(0.6)
P 		31.9
(-3)
A 		50.1
(-0.8)
P 		81.2
(3)
P 		49
C 38.7
(-3)
A 		65.4
(0.2)
P 		57.1
(-0.8)
A 		89
(3)
A 		53.8
(-1.2)
A 		54
(-1.2)
P 		50
avr 49.9
(-3) 		54.7
(-1.5) 		55.3
(-1.4) 		61.5
(0.5) 		51.5
(-2.5) 		69.7
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.2
(1.9)
A 		4.8
(-3)
A 		12.1
(0.4)
A 		17.5
(3)
P 		13
B 16.1
(1.5)
A 		16
(1.3)
A 		12.9
(-3)
A 		17.2
(3)
A 		4
C 11.5
(-3)
A 		13.2
(1.1)
A 		12.9
(0.4)
A 		14
(3)
A 		3
avr 14.3
(0.7) 		11.3
(-3) 		12.6
(-1.4) 		16.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.2
(-3)
A 		9.9
(-2.5)
A 		10.3
(-2.3)
M 		16.1
(1.7)
P 		15.3
(1.2)
A 		18
(3)
A 		9
B 21.1
(0.5)
P 		23.5
(1.1)
A 		15
(-1.2)
P 		8.4
(-3)
A 		20.4
(0.3)
P 		30.3
(3)
P 		22
C 14.3
(-3)
A 		20
(3)
P 		14.5
(-2.8)
A 		17.9
(0.8)
A 		17.4
(0.3)
A 		18.1
(1)
P 		6
avr 14.9
(-1.9) 		17.8
(0.1) 		13.3
(-3) 		14.1
(-2.5) 		17.7
(-0) 		22.1
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19490
Sequence Type Exemplar sequence
Representative Public ID Y19D10B.D NCBI
Target Description Y19D10B.D /REP_DB=WormBase Gene ID /WP=CE25227 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59427.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071232 NCBI Caenorhabditis elegans Y19D10B.4 (Y19D10B.4) mRNA, complete cds. 11/11 None
GENEFINDER00000024002 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2304185:2308987:-1 11/11 None
Y19D10B.4 ENSEMBL cdna:known chromosome:CEL140:V:2304185:2308987:-1 gene:Y19D10B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023994 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2304184-2308987(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y19D10B.4
Entrez Gene 189495 Entrez gene
SwissProt Q9N569 EMBL-EBI
WormBase CE25227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59427 Hypothetical protein Y19D10B.4 [Caenorhabditis elegans] ref|NP_503633.1| Y19D10B.4 [Caenorhabditis elegans] 0.0
blast CAA90754 Hypothetical protein C05D12.2 [Caenorhabditis elegans] ref|NP_496433.2| C05D12.2 [Caenorhabditis elegans] 0.0
blast CAE59510 Hypothetical protein CBG02899 [Caenorhabditis briggsae] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:177056_AT
ggttctgggatttacggcagctaccaatgatgacaatgcttcaactcaaattatttcaca
aagaagctcctctgattcgcagccaatcttcaccacactgaaaactaccaatcacattgt
gcccaccgatttggaaattcaaattgtgaacagacagagatacgatcaaccagtaagcta
tgtgaaattgggaaatgctcaacgagataccaactcatgttcttacgatttcatctcaga
tagtgtagtggtaccaaaaagtaccctgacaatgtggatagtctcggctaccgacaatgc
gggaaaacttattctccaccgaatcttttactactacttgccacgtattctttcggaatt
tgcagttgtcctccagggttttatggagatttttgtgaaattatgctcgtgctccccacc
aacactactacagtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCTGGGATTTACGGCAGCTACC 259 507 2187 Antisense
CAAAGAAGCTCCTCTGATTCGCAGC 261 193 2245 Antisense
AGCCAATCTTCACCACACTGAAAAC 171 85 2267 Antisense
TCACATTGTGCCCACCGATTTGGAA 381 625 2298 Antisense
CGAGATACCAACTCATGTTCTTACG 58 251 2389 Antisense
ATGTTCTTACGATTTCATCTCAGAT 511 47 2403 Antisense
ATGTGGATAGTCTCGGCTACCGACA 436 47 2458 Antisense
TGCGGGAAAACTTATTCTCCACCGA 406 581 2484 Antisense
TCTCCACCGAATCTTTTACTACTAC 557 597 2499 Antisense
ACTACTACTTGCCACGTATTCTTTC 607 101 2516 Antisense
TCCCCACCAACACTACTACAGTGTC 138 597 2599 Antisense
Sequence Source Affymetrix Proprietary Database