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[177054_at] 7TM chemoreceptor, srv family

Description Y73B6BL.T /REP_DB=WormBase Gene ID /WP=CE26292 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23478.1
Cluster 4grp_high_8_8 > 20      6grp_total > 0      4grp_total > 09      6grp_total_sub > Hat      6grp_cgc > 54      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 19.4
(-3)
A 		106
(0.7)
P 		76.5
(-0.6)
A 		161.4
(3)
P 		142
B 92.3
(1.7)
P 		36.9
(-3)
A 		80.7
(0.7)
A 		108.2
(3)
P 		71
C 54.4
(-2.9)
P 		73.4
(-2.1)
A 		50.6
(-3)
P 		208.9
(3)
P 		158
avr 55.4
(-3) 		72.1
(-2) 		69.3
(-2.2) 		159.5
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 52.7
(-1.1)
P 		59.4
(-0.5)
A 		97.8
(3)
P 		32.5
(-3)
A 		96.3
(2.9)
P 		44
(-1.9)
A 		65
B 39.9
(0.1)
P 		56.2
(2.2)
P 		16
(-3)
A 		29.8
(-1.2)
A 		62.3
(3)
P 		58.7
(2.5)
P 		46
C 49.1
(-1.9)
P 		144
(3)
P 		41.7
(-2.3)
A 		27.4
(-3)
A 		44.2
(-2.1)
A 		52.8
(-1.7)
P 		117
avr 47.2
(-1.2) 		86.5
(3) 		51.8
(-0.7) 		29.9
(-3) 		67.6
(1) 		51.8
(-0.7) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 7.1
(-3)
A 		23
(2.8)
P 		20
(1.7)
A 		23.6
(3)
P 		17
B 29.4
(3)
P 		9.1
(-3)
A 		18.7
(-0.2)
A 		23.1
(1.1)
P 		20
C 18
(-2.9)
P 		21.1
(-1.8)
A 		17.6
(-3)
P 		35.2
(3)
P 		18
avr 18.2
(-2.7) 		17.7
(-3) 		18.8
(-2.3) 		27.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 9.7
(-2.6)
P 		21.1
(0.7)
A 		21.3
(0.8)
P 		8.3
(-3)
A 		29.1
(3)
P 		10.7
(-2.3)
A 		21
B 13.9
(-0.2)
P 		18.7
(1.1)
P 		3.9
(-3)
A 		7.9
(-1.9)
A 		25.3
(3)
P 		21.9
(2)
P 		21
C 18.2
(-1)
P 		43.9
(3)
P 		10.6
(-2.2)
A 		5.5
(-3)
A 		14.3
(-1.6)
A 		17.7
(-1.1)
P 		38
avr 13.9
(-1.1) 		27.9
(3) 		11.9
(-1.6) 		7.2
(-3) 		22.9
(1.6) 		16.8
(-0.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19292
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.T NCBI
Target Description Y73B6BL.T /REP_DB=WormBase Gene ID /WP=CE26292 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23478.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068556 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-24) (srv-24) mRNA, complete cds. 11/11 None
GENEFINDER00000032072 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6288348:6290858:-1 11/11 None
Y73B6BL.10 ENSEMBL cdna:known chromosome:CEL140:IV:6288348:6290825:-1 gene:Y73B6BL.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032025 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6288353-6290831(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-24
Ensembl Y73B6BL.10
Entrez Gene 190646 Entrez gene
SwissProt Q9GUH2 EMBL-EBI
WormBase CE26292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23478 Serpentine receptor, class v protein 24 [Caenorhabditis elegans] ref|NP_500957.1| Serpentine Receptor, class V family member (srv-24) [Caenorhabditis elegans] 1.0E-172
blast CAE61567 Hypothetical protein CBG05477 [Caenorhabditis briggsae] 1.0E-136
blast NP_500955 Serpentine Receptor, class V family member (srv-32) [Caenorhabditis elegans] gb|AAB38127.1| Serpentine receptor, class v protein 32 [Caenorhabditis elegans] 1.0E-124
blast NP_500955 Serpentine Receptor, class V family member (srv-32) [Caenorhabditis elegans] gb|AAB38127.1| Serpentine receptor, class v protein 32 [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500957.1 7 4-23,44-66,86-108,121-143,172-194,215-232,247-269
Y73B6BL.10 7 4-23,44-66,86-108,121-143,172-194,215-232,247-269
GENEFINDER00000032072 7 15-34,55-77,97-119,132-154,183-205,226-243,258-280
Sequence
Target Sequence 
>C. ELEGANS:177054_AT
tattggggtgttcctactctaattagtttagtagtgttgaaggatacaaacttcaaatat
gacagcttggaaagtatgtcaataattgcggagcaagaagtcatcaagagaaacacactg
atggcacttatagttgtgagcctgacttgtattttgtgctcattggcatatggagctctt
ttctattatatccggaaacatactgccggactttcaaggtcactacggcgagaagttcat
ttggcatttcaagtatttgtattgcttctggcattttttgttatactggtttactatgca
tttcaaaattacttttcgcaaacgcacaatacaggaccaatcttctacatgcgtgctcta
tatccagttgccaatggccttctctcctatatcaacccattttgcatactatttctgaac
aaagatctcgctcgtcaagtcatacggtcaatgacttgtcataagtacaaagtgagtgaa
gctcaagtatctggaattgcttcgacatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGGGGTGTTCCTACTCTAATTA 370 665 403 Antisense
GTTGTGAGCCTGACTTGTATTTTGT 401 437 535 Antisense
GGAGCTCTTTTCTATTATATCCGGA 548 521 574 Antisense
AAACATACTGCCGGACTTTCAAGGT 121 127 598 Antisense
GGACTTTCAAGGTCACTACGGCGAG 10 525 610 Antisense
ATTACTTTTCGCAAACGCACAATAC 245 13 710 Antisense
ATACAGGACCAATCTTCTACATGCG 272 23 731 Antisense
TACATGCGTGCTCTATATCCAGTTG 219 645 748 Antisense
TATCCAGTTGCCAATGGCCTTCTCT 467 657 763 Antisense
AAAGATCTCGCTCGTCAAGTCATAC 196 123 823 Antisense
GTATCTGGAATTGCTTCGACATCTA 332 455 889 Antisense
Sequence Source Affymetrix Proprietary Database