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[177052_s_at]

Description Y42H9AR.D /REP_DB=WormBase Gene ID /WP=CE25276 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60562.1
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 30      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 81      6grp_total > 52      4grp_total > 31      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 307.4
(3)
P 		163.8
(-2.2)
P 		141.5
(-3)
P 		157.7
(-2.4)
P 		166
B 312.5
(3)
P 		164.8
(-1.7)
P 		162.1
(-1.8)
P 		123.9
(-3)
P 		189
C 259.3
(1)
P 		123.1
(-3)
P 		152.4
(-2.1)
P 		325.8
(3)
P 		203
avr 293.1
(3) 		150.6
(-3) 		152
(-2.9) 		202.5
(-0.8) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 244.9
(-1.2)
P 		227.4
(-2)
P 		341.3
(3)
P 		297.4
(1.1)
P 		235.3
(-1.6)
P 		203.9
(-3)
P 		137
B 313.1
(1.6)
P 		312.6
(1.5)
P 		347
(3)
P 		205.3
(-3)
P 		263.9
(-0.5)
P 		268.8
(-0.3)
P 		142
C 242.6
(-0.2)
P 		307.7
(2)
P 		331.1
(2.8)
P 		338.2
(3)
P 		160.3
(-3)
P 		273.5
(0.8)
P 		178
avr 266.9
(-0.6) 		282.6
(0.1) 		339.8
(3) 		280.3
(0) 		219.8
(-3) 		248.7
(-1.6) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 111.9
(3)
P 		35.6
(-2.2)
P 		37
(-2.1)
P 		23.1
(-3)
P 		89
B 99.7
(3)
P 		40.7
(-1.8)
P 		37.6
(-2.1)
P 		26.4
(-3)
P 		73
C 85.8
(3)
P 		35.4
(-3)
P 		53.1
(-0.9)
P 		54.9
(-0.7)
P 		50
avr 99.1
(3) 		37.2
(-2.8) 		42.6
(-2.3) 		34.8
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 45.1
(-3)
P 		80.9
(3)
P 		74.3
(1.9)
P 		75.4
(2.1)
P 		71
(1.3)
P 		49.6
(-2.2)
P 		36
B 109
(3)
P 		104
(2.5)
P 		84.3
(0.3)
P 		54.4
(-3)
P 		107.2
(2.8)
P 		100.2
(2)
P 		55
C 89.9
(2.4)
P 		93.9
(3)
P 		84.3
(1.6)
P 		68
(-0.7)
P 		51.9
(-3)
P 		91.6
(2.7)
P 		42
avr 81.3
(0.4) 		92.9
(3) 		81
(0.4) 		65.9
(-3) 		76.7
(-0.6) 		80.5
(0.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177052_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19099
Sequence Type Exemplar sequence
Representative Public ID Y42H9AR.D NCBI
Target Description Y42H9AR.D /REP_DB=WormBase Gene ID /WP=CE25276 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60562.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068951 NCBI Caenorhabditis elegans Y42H9AR.3 (Y42H9AR.3) mRNA, complete cds. 11/11 None
SNAP00000030216 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8104462:8107579:-1 11/11 None
GENEFINDER00000030222 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8104462:8107579:-1 11/11 None
Y42H9AR.3 ENSEMBL cdna:known chromosome:CEL140:IV:8104336:8107579:-1 gene:Y42H9AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8104467-8107131(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ztf-5
Ensembl Y42H9AR.3
Entrez Gene 177603 Entrez gene
SwissProt Q9N3Y4 EMBL-EBI
WormBase CE29111 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.9689.1.S1_AT similar to FYVE-finger-containing Rab5 effector protein rabenosyn-5 cfa
CANINE_2:CFAAFFX.7822.1.S1_AT similar to FYVE-finger-containing Rab5 effector protein rabenosyn-5 cfa
CANINE_2:CFAAFFX.7822.1.S1_S_AT similar to FYVE-finger-containing Rab5 effector protein rabenosyn-5 cfa
DROSOPHILA_2:1632516_AT dm
DROSGENOME1:154493_AT dm
CHICKEN:GGAAFFX.5354.1.S1_AT similar to FYVE-finger-containing Rab5 effector protein rabenosyn-5 gga
HU35KSUBA:HUM_ALU_AT zinc finger, FYVE domain containing 20 hs
HU35KSUBB:HUM_ALU_AT zinc finger, FYVE domain containing 20 hs
HU35KSUBC:HUM_ALU_AT zinc finger, FYVE domain containing 20 hs
HU35KSUBD:HUM_ALU_AT zinc finger, FYVE domain containing 20 hs
HUGENEFL:HUM_ALU_AT zinc finger, FYVE domain containing 20 hs
HC-G110:HUM_ALU_AT zinc finger, FYVE domain containing 20 hs
HU35KSUBB:RC_N59228_AT zinc finger, FYVE domain containing 20 hs
U133_X3P:HS.173002.0.A1_3P_AT zinc finger, FYVE domain containing 20 hs
U133_X3P:HS.167279.0.S2_3P_AT zinc finger, FYVE domain containing 20 hs
HG-U133_PLUS_2:226581_AT zinc finger, FYVE domain containing 20 hs
HG-U133B:226581_AT zinc finger, FYVE domain containing 20 hs
HG-U133_PLUS_2:231765_AT zinc finger, FYVE domain containing 20 hs
HG-U133B:231765_AT zinc finger, FYVE domain containing 20 hs
HG-U95B:54804_AT zinc finger, FYVE domain containing 20 hs
HG-U95D:67849_AT zinc finger, FYVE domain containing 20 hs
HG-U95D:74007_AT zinc finger, FYVE domain containing 20 hs
HG-U95E:80412_AT zinc finger, FYVE domain containing 20 hs
HG-U95D:82654_AT zinc finger, FYVE domain containing 20 hs
U133_X3P:HS2.335336.1.S1_3P_AT Zinc finger, FYVE domain containing 20 hs
HG-U133_PLUS_2:1569714_AT Zinc finger, FYVE domain containing 20 hs
HG-U95D:69544_R_AT Zinc finger, FYVE domain containing 20 hs
HG-U95E:70992_AT Zinc finger, FYVE domain containing 20 hs
HG-U95D:79352_AT Zinc finger, FYVE domain containing 20 hs
MOE430B:1429517_AT zinc finger, FYVE domain containing 20 mm
MOUSE430_2:1429517_AT zinc finger, FYVE domain containing 20 mm
MG-U74BV2:111595_AT zinc finger, FYVE domain containing 20 mm
MG-U74BV2:109723_AT zinc finger, FYVE domain containing 20 mm
MG-U74BV2:114887_AT zinc finger, FYVE domain containing 20 mm
MOE430B:1435093_AT zinc finger, FYVE domain containing 20 mm
MOUSE430_2:1435093_AT zinc finger, FYVE domain containing 20 mm
MOE430B:1456754_AT zinc finger, FYVE domain containing 20 mm
MOUSE430_2:1456754_AT zinc finger, FYVE domain containing 20 mm
MU19KSUBA:TC18754_AT zinc finger, FYVE domain containing 20 mm
MU19KSUBB:TC25859_AT Zinc finger, FYVE domain containing 20 (Zfyve20), mRNA mm
RAE230A:1375622_AT zinc finger, FYVE domain containing 20 (predicted) rn
RAT230_2:1375622_AT zinc finger, FYVE domain containing 20 (predicted) rn
RAE230B:1380754_AT Zinc finger, FYVE domain containing 20 (predicted) rn
RAT230_2:1380754_AT Zinc finger, FYVE domain containing 20 (predicted) rn
RAE230B:1390996_AT Zinc finger, FYVE domain containing 20 (predicted) rn
RAT230_2:1390996_AT Zinc finger, FYVE domain containing 20 (predicted) rn
RAE230B:1394262_AT Zinc finger, FYVE domain containing 20 (predicted) rn
RAT230_2:1394262_AT Zinc finger, FYVE domain containing 20 (predicted) rn
RG-U34B:RC_AA848815_AT Zinc finger, FYVE domain containing 20 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60562 Hypothetical protein Y42H9AR.3 [Caenorhabditis elegans] ref|NP_501352.1| Y42H9AR.3 [Caenorhabditis elegans] 0.0
blast CAE58412 Hypothetical protein CBG01543 [Caenorhabditis briggsae] 0.0
blast AAF60562 Hypothetical protein Y42H9AR.3 [Caenorhabditis elegans] ref|NP_501352.1| Y42H9AR.3 [Caenorhabditis elegans] 1.0E-172
blast CAE58412 Hypothetical protein CBG01543 [Caenorhabditis briggsae] 1.0E-137
blast BAB46907.1 hypothetical protein [Macaca fascicularis] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.7E-14
Sequence
Target Sequence 
>C. ELEGANS:177052_S_AT
gattatatgcagtccaagctcttcaaggtcttattggtcaaatggaatccctaccaacag
ccgaagaatgctcgaatctgataataaaaagaaaagaaagacgagctaaggattttgcaa
gagtaaacagaactgtgatgaagatgtcaagttcaatgccacaactacaggaacaacatt
cacacttaaacagtacaagcagtgtatcttcatttggaggcccatcatcgattgacgatg
gatggagtgcggaagataatgatctagtattcgagccgagttcaatcgaagatgatacaa
tacaaacggatcatcccttgtatgagcaacgagaacaacttcggaagtttttatttcaag
catcagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATATGCAGTCCAAGCTCTTCA 597 429 1010 Antisense
GCTCTTCAAGGTCTTATTGGTCAAA 324 299 1027 Antisense
CAAATGGAATCCCTACCAACAGCCG 652 187 1048 Antisense
AACAGCCGAAGAATGCTCGAATCTG 357 135 1065 Antisense
GAAGATGTCAAGTTCAATGCCACAA 109 339 1149 Antisense
CAATGCCACAACTACAGGAACAACA 501 181 1163 Antisense
GGAACAACATTCACACTTAAACAGT 32 529 1179 Antisense
CAAGCAGTGTATCTTCATTTGGAGG 321 185 1205 Antisense
ATTTGGAGGCCCATCATCGATTGAC 531 17 1221 Antisense
ACGGATCATCCCTTGTATGAGCAAC 551 95 1315 Antisense
AAGTTTTTATTTCAAGCATCAGCAA 316 157 1354 Antisense
Sequence Source Affymetrix Proprietary Database