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[177050_at]

Description Y42H9AR.C /REP_DB=WormBase Gene ID /WP=CE25275 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60561.1
Cluster 6grp_high1_10_10 > 65      4grp_highest_8_8 > 45      4grp_high_8_8 > 08      6grp_total > 55      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 154.4
(2.9)
P 		80.1
(-3)
P 		129.5
(0.9)
P 		156.3
(3)
P 		76
B 165.2
(3)
P 		118.7
(-2.7)
P 		116
(-3)
P 		117.5
(-2.8)
P 		49
C 184
(1.1)
P 		156.5
(-2.4)
P 		151.7
(-3)
P 		199.4
(3)
P 		48
avr 167.9
(3) 		118.4
(-3) 		132.4
(-1.3) 		157.7
(1.8) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 104.4
(-1.8)
A 		125.5
(-0.5)
P 		178.8
(3)
P 		86.7
(-3)
P 		135.2
(0.2)
P 		149
(1.1)
P 		92
B 156.4
(2.2)
P 		151.9
(1.2)
P 		160.5
(3)
P 		131.4
(-3)
P 		133.6
(-2.5)
P 		149.2
(0.7)
P 		29
C 113.5
(-3)
P 		168.8
(0.5)
P 		143.7
(-1.1)
P 		141.1
(-1.3)
P 		122.4
(-2.4)
P 		208.3
(3)
P 		95
avr 124.8
(-2.4) 		148.7
(0.5) 		161
(2) 		119.7
(-3) 		130.4
(-1.7) 		168.8
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 56.2
(3)
P 		17.4
(-3)
P 		33.9
(-0.4)
P 		22.9
(-2.1)
P 		39
B 52.7
(3)
P 		29.3
(-2.1)
P 		26.9
(-2.6)
P 		25
(-3)
P 		28
C 60.9
(3)
P 		45
(-0.5)
P 		52.9
(1.2)
P 		33.6
(-3)
P 		27
avr 56.6
(3) 		30.6
(-2.3) 		37.9
(-0.8) 		27.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 19.2
(-3)
A 		44.6
(3)
P 		38.9
(1.7)
P 		22
(-2.3)
P 		40.8
(2.1)
P 		36.3
(1)
P 		25
B 54.4
(2.7)
P 		50.5
(1.5)
P 		39
(-1.8)
P 		34.8
(-3)
P 		54.3
(2.6)
P 		55.6
(3)
P 		21
C 42.1
(-1)
P 		51.5
(0.4)
P 		36.6
(-1.8)
P 		28.4
(-3)
P 		39.6
(-1.4)
P 		69.7
(3)
P 		41
avr 38.6
(-0.6) 		48.9
(1.8) 		38.2
(-0.7) 		28.4
(-3) 		44.9
(0.9) 		53.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19103
Sequence Type Exemplar sequence
Representative Public ID Y42H9AR.C NCBI
Target Description Y42H9AR.C /REP_DB=WormBase Gene ID /WP=CE25275 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60561.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068952(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068952 NCBI Caenorhabditis elegans Y42H9AR.4 (Y42H9AR.4) mRNA, complete cds. 9/11 None
SNAP00000030217 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8108281:8112186:-1 9/11 None
GENEFINDER00000030219 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8108281:8112186:-1 9/11 None
Y42H9AR.4 ENSEMBL cdna:known chromosome:CEL140:IV:8107590:8112186:-1 gene:Y42H9AR.4 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8107204-8111410(-) 93.07 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42H9AR.4
Entrez Gene 3565368 Entrez gene
SwissProt Q9N3Y3 EMBL-EBI
WormBase CE37682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60561 Hypothetical protein Y42H9AR.4 [Caenorhabditis elegans] ref|NP_501353.2| Y42H9AR.4 [Caenorhabditis elegans] 0.0
blast CAE58413 Hypothetical protein CBG01544 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177050_AT
agaagttacttcagtgctacaccaaaacctgcaacaacaacaaatacacgaaaacttagt
gaaaatggatcagaggacattgaaatgccatcagatattgaagattttgatgcgaaagca
gttggttctcgaatagttgcaaaattaattgcaggaggtattctccctgattcaagtgct
catatctttgagcaaatgacacaggaaaactatgaagatggaaatagtgctggagtatca
acaaaagttgaaatgagtgaagaaggaaaagatgatgcagaagatcaagagattggagaa
cttgcagaagaactccaaaatctccaaatgaatctaaaagaagaaatggctgctaaaaat
gctcttttcatgttaacgtggcgacgagctaaagctcattttgctttcttccacacgttt
aatgaattgaaaagaggcgattatgataataaaaatttaggaattacagtactctttaaa
ggcgcacaactgtttgtatttaacaaagattgtcgtctcgagaccgggtaccgtatttct
ggagccaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTTACTTCAGTGCTACACCAA 191 73 1024 Antisense
GATGCGAAAGCAGTTGGTTCTCGAA 551 413 1132 Antisense
AATTGCAGGAGGTATTCTCCCTGAT 345 179 1170 Antisense
ATTCTCCCTGATTCAAGTGCTCATA 297 11 1183 Antisense
GAACTCCAAAATCTCCAAATGAATC 16 349 1333 Antisense
GGCTGCTAAAAATGCTCTTTTCATG 175 541 1371 Antisense
TAACGTGGCGACGAGCTAAAGCTCA 566 633 1397 Antisense
AAAGCTCATTTTGCTTTCTTCCACA 650 123 1414 Antisense
TTGCTTTCTTCCACACGTTTAATGA 120 703 1424 Antisense
ACAAAGATTGTCGTCTCGAGACCGG 69 111 1526 Antisense
GGTACCGTATTTCTGGAGCCAAAAT 533 493 1550 Antisense
Sequence Source Affymetrix Proprietary Database