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[177049_s_at]

Description Y73B6BL.F /REP_DB=WormBase Gene ID /WP=CE26279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23465.1
Cluster 6grp_high1_10_10 > 99      6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 44.1
(-2.3)
A 		27.6
(-3)
A 		72.3
(-1)
P 		161.8
(3)
P 		134
B 50.4
(-3)
A 		64.6
(-2)
A 		56.3
(-2.6)
A 		138.4
(3)
P 		88
C 84.7
(0.1)
A 		73.8
(-0.9)
A 		50.1
(-3)
P 		118
(3)
P 		68
avr 59.7
(-2.7) 		55.3
(-3) 		59.6
(-2.7) 		139.4
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 72.6
(-2.3)
P 		28.9
(-3)
A 		70.8
(-2.3)
P 		149.6
(-1.1)
P 		409.7
(3)
P 		389.7
(2.7)
P 		381
B 41.6
(-3)
A 		60.6
(-2.7)
P 		57.3
(-2.7)
A 		122.8
(-1.6)
P 		380.5
(2.8)
P 		391
(3)
P 		349
C 20.2
(-3)
A 		78.4
(-2.1)
A 		68.2
(-2.2)
A 		104.5
(-1.6)
M 		394.4
(3)
P 		394.5
(3)
P 		374
avr 44.8
(-3) 		56
(-2.8) 		65.4
(-2.6) 		125.6
(-1.6) 		394.9
(3) 		391.7
(2.9) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 16
(0.4)
A 		6
(-3)
A 		18.9
(1.4)
P 		23.7
(3)
P 		18
B 16.1
(-1.9)
A 		16
(-1.9)
A 		13.1
(-3)
A 		29.5
(3)
P 		16
C 28
(3)
A 		21.2
(-0.9)
A 		17.5
(-3)
P 		19.9
(-1.6)
P 		11
avr 20
(0.4) 		14.4
(-3) 		16.5
(-1.7) 		24.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 13.4
(-2.8)
P 		10.3
(-3)
A 		15.4
(-2.7)
P 		37.9
(-1.5)
P 		123.6
(3)
P 		94.9
(1.5)
P 		113
B 14.5
(-3)
A 		20.2
(-2.7)
P 		13.9
(-3)
A 		32.5
(-2.2)
P 		154.6
(3)
P 		145.8
(2.6)
P 		141
C 7.5
(-3)
A 		23.9
(-2.2)
A 		17.4
(-2.5)
A 		21
(-2.3)
M 		127.6
(2.8)
P 		132.1
(3)
P 		125
avr 11.8
(-3) 		18.1
(-2.7) 		15.6
(-2.8) 		30.5
(-2.1) 		135.3
(3) 		124.3
(2.5) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177049_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19260
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.F NCBI
Target Description Y73B6BL.F /REP_DB=WormBase Gene ID /WP=CE26279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23465.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068399(11), NM_068579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068399 NCBI Caenorhabditis elegans ZK616.5 (ZK616.5) mRNA, complete cds. 11/11 A 
NM_068579 NCBI Caenorhabditis elegans Y73B6BL.23 (Y73B6BL.23) mRNA, complete cds. 11/11 None
SNAP00000016312 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5392161:5393031:1 11/11 None
GENEFINDER00000016325 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5392161:5393031:1 11/11 None
SNAP00000032057 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6418187:6419062:-1 11/11 None
GENEFINDER00000032099 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6418187:6419062:-1 11/11 None
ZK616.5 ENSEMBL cdna:known chromosome:CEL140:IV:5392161:5393031:1 gene:ZK616.5 11/11 A 
Y73B6BL.23 ENSEMBL cdna:known chromosome:CEL140:IV:6417680:6419062:-1 gene:Y73B6BL.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6418192-6422478(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZK616.5
Y73B6BL.23
Entrez Gene 177323 Entrez gene
177404 Entrez gene
SwissProt Q95XC9 EMBL-EBI
Q965Z2 EMBL-EBI
WormBase CE27530 Wormbase
CE27558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68593 Hypothetical protein Y73B6BL.23 [Caenorhabditis elegans] ref|NP_500980.1| Y73B6BL.23 [Caenorhabditis elegans] 1.0E-111
blast AAK68624 Hypothetical protein ZK616.5 [Caenorhabditis elegans] ref|NP_500800.1| ZK616.5 [Caenorhabditis elegans] 1.0E-104
blast AAK68624 Hypothetical protein ZK616.5 [Caenorhabditis elegans] ref|NP_500800.1| ZK616.5 [Caenorhabditis elegans] 5.0E-99
Sequence
Target Sequence 
>C. ELEGANS:177049_S_AT
atgccaaactatcgaggacgtcatcaaacgagacagaattggagttctaagccaagagaa
gagcactccccgagcaaaggcacatacacggacaaaatccggagcgttccagtcagtgag
gtcgtcaggcaacaaacggtgaacgactgggtgactacaggtgcttattcgcttggatcg
ccagactcgtggccatcttatccggacgaaatcatactgatgaacgagtcccgaaatgct
cagacatcccgcaattcgcgtcggtcggctactcccggtccaaacggtaccaacaactcc
aacgattcgagtatctgtggcattatggaggaattcgaggagctcgtatatccacaatgg
gtttactatctgtacccattgattcccaccgcgcccaactgcaacaacgagaagtcgtac
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAAACTATCGAGGACGTCATC 338 41 574 Antisense
GAGGACGTCATCAAACGAGACAGAA 180 403 587 Antisense
GAGACAGAATTGGAGTTCTAAGCCA 251 389 603 Antisense
AGCCAAGAGAAGAGCACTCCCCGAG 612 83 623 Antisense
ACGACTGGGTGACTACAGGTGCTTA 282 91 716 Antisense
TCGTGGCCATCTTATCCGGACGAAA 630 605 760 Antisense
TATCCGGACGAAATCATACTGATGA 397 657 772 Antisense
ACTGATGAACGAGTCCCGAAATGCT 462 95 789 Antisense
TCCCGAAATGCTCAGACATCCCGCA 362 595 802 Antisense
GTTTACTATCTGTACCCATTGATTC 570 449 934 Antisense
AACTGCAACAACGAGAAGTCGTACA 689 139 970 Antisense
Sequence Source Affymetrix Proprietary Database