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[177048_at]

Description Y73B6BL.F /REP_DB=WormBase Gene ID /WP=CE26279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23465.1
Cluster 6grp_total > 99      4grp_total > 28      6grp_cgc > 89      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 31.8
(0.1)
A 		20.5
(-1.4)
A 		9.2
(-3)
A 		52.3
(3)
A 		43
B 25.1
(-0.9)
A 		12.7
(-3)
A 		13.1
(-2.9)
A 		47.7
(3)
A 		35
C 31.4
(-0.3)
A 		62.3
(3)
A 		32.3
(-0.2)
A 		5.5
(-3)
A 		57
avr 29.4
(1) 		31.8
(1.8) 		18.2
(-3) 		35.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 26.5
(-0.9)
A 		3.7
(-3)
A 		33.9
(-0.3)
A 		42
(0.5)
A 		69.8
(3)
A 		66.1
(2.7)
A 		66
B 18.4
(-2.1)
A 		5.2
(-3)
A 		5.3
(-3)
A 		7.5
(-2.8)
A 		71.2
(1.7)
A 		89.2
(3)
A 		84
C 16.9
(-2.3)
A 		6.4
(-3)
A 		8.1
(-2.9)
A 		7.6
(-2.9)
A 		97
(3)
A 		20.2
(-2.1)
A 		91
avr 20.6
(-1.7) 		5.1
(-3) 		15.8
(-2.1) 		19
(-1.9) 		79.3
(3) 		58.5
(1.3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.6
(3)
A 		4.4
(-1.7)
A 		2.4
(-3)
A 		7.7
(0.5)
A 		9
B 8
(1.2)
A 		3.1
(-2.9)
A 		3
(-3)
A 		10.2
(3)
A 		7
C 10.4
(0.4)
A 		17.9
(3)
A 		11.3
(0.7)
A 		0.9
(-3)
A 		17
avr 10
(3) 		8.5
(1) 		5.6
(-3) 		6.3
(-2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.9
(-1.9)
A 		1.3
(-3)
A 		7.4
(-1.2)
A 		10.6
(-0.2)
A 		21.1
(3)
A 		16.1
(1.5)
A 		20
B 6.4
(-2)
A 		1.7
(-2.9)
A 		1.3
(-3)
A 		2
(-2.9)
A 		28.9
(2.2)
A 		33.3
(3)
A 		32
C 6.3
(-2)
A 		1.9
(-2.9)
A 		2.1
(-2.9)
A 		1.5
(-3)
A 		31.4
(3)
A 		6.8
(-1.9)
A 		30
avr 5.9
(-2) 		1.6
(-3) 		3.6
(-2.5) 		4.7
(-2.3) 		27.1
(3) 		18.7
(1) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19260
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.F NCBI
Target Description Y73B6BL.F /REP_DB=WormBase Gene ID /WP=CE26279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23465.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068399, NM_068579
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000016312 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5392161:5393031:1 None
Y73B6BL.23 ENSEMBL cdna:known chromosome:CEL140:IV:6417680:6419062:-1 gene:Y73B6BL.23 A 
GENEFINDER00000016325 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5392161:5393031:1 None
NM_068579 NCBI Caenorhabditis elegans Y73B6BL.23 (Y73B6BL.23) mRNA, complete cds. A 
NM_068399 NCBI Caenorhabditis elegans ZK616.5 (ZK616.5) mRNA, complete cds. A 
GENEFINDER00000032099 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6418187:6419062:-1 None
ZK616.5 ENSEMBL cdna:known chromosome:CEL140:IV:5392161:5393031:1 gene:ZK616.5 A 
SNAP00000032057 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6418187:6419062:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6418192-6422478(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZK616.5
Y73B6BL.23
Entrez Gene 177323 Entrez gene
177404 Entrez gene
SwissProt Q95XC9 EMBL-EBI
Q965Z2 EMBL-EBI
WormBase CE27530 Wormbase
CE27558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68593 Hypothetical protein Y73B6BL.23 [Caenorhabditis elegans] ref|NP_500980.1| Y73B6BL.23 [Caenorhabditis elegans] 1.0E-111
blast AAK68624 Hypothetical protein ZK616.5 [Caenorhabditis elegans] ref|NP_500800.1| ZK616.5 [Caenorhabditis elegans] 1.0E-104
blast AAK68624 Hypothetical protein ZK616.5 [Caenorhabditis elegans] ref|NP_500800.1| ZK616.5 [Caenorhabditis elegans] 5.0E-99
Sequence
Target Sequence 
>C. ELEGANS:177048_AT
tagctgcgggtgctcgagctgaaaatagatgtcccttgagagtcaactctgctgcgtatg
aatcggacatcgacttgctccagcattgcatgtgtgcagcgtggtgtcccgggcaaaccc
atcctttgtggcatccccggcggctcgaagtagttgagcgatttggtgagcccatgccaa
actatcgaggacgtcatcaaacgagacagaattggagttctaagccaagagaagagcact
ccccgagcaaaggcacatacacggacaaaatccggagcgttccagtcagtgaggtcgtca
ggcaacaaacggtgaacgactgggtgactacaggtgcttattcgcttggatcgccagact
cgtggccatcttatccggacgaaatcatactgatgaacgagtcccgaaatgctcagacat
cccgcaattcgcgtcggtcggctactcccggtccaaacggtaccaacaactccaacgatt
cgagtatctgtggcattatggaggaattcgaggagctcgtatatccacaatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCTGCGGGTGCTCGAGCTGAAAA 614 647 401 Antisense
AGATGTCCCTTGAGAGTCAACTCTG 618 67 427 Antisense
GTCAACTCTGCTGCGTATGAATCGG 240 463 442 Antisense
ATGAATCGGACATCGACTTGCTCCA 57 45 458 Antisense
TCGACTTGCTCCAGCATTGCATGTG 340 601 470 Antisense
ATTGCATGTGTGCAGCGTGGTGTCC 599 5 485 Antisense
TGAGCGATTTGGTGAGCCCATGCCA 498 569 555 Antisense
CTCCCCGAGCAAAGGCACATACACG 47 235 639 Antisense
TCCGGAGCGTTCCAGTCAGTGAGGT 589 593 671 Antisense
GTACCAACAACTCCAACGATTCGAG 651 457 860 Antisense
GAGGAGCTCGTATATCCACAATGGG 448 403 910 Antisense
Sequence Source Affymetrix Proprietary Database