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[177047_at]

Description Y42H9AR.B /REP_DB=WormBase Gene ID /WP=CE25274 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60560.1
Cluster 6grp_total > 93      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5
(3)
A 		1.9
(-3)
A 		3
(-0.9)
A 		4.3
(1.6)
A 		3
B 15.1
(3)
A 		0.9
(-3)
A 		2.5
(-2.3)
A 		2.2
(-2.5)
A 		14
C 4.7
(-0.8)
A 		3.4
(-1.8)
A 		1.8
(-3)
A 		9.6
(3)
A 		8
avr 8.3
(3) 		2.1
(-3) 		2.4
(-2.7) 		5.4
(0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.5
(-2.4)
A 		1
(-3)
A 		1.5
(-2.9)
A 		1.6
(-2.9)
A 		34.9
(3)
A 		6
(-2.1)
A 		34
B 2
(-1.6)
A 		4.9
(3)
A 		1.1
(-3)
A 		2.4
(-0.9)
A 		1.7
(-2.1)
A 		2
(-1.6)
A 		4
C 2.7
(-2.7)
A 		4.9
(-1.6)
A 		14.6
(3)
A 		5.4
(-1.4)
A 		2.2
(-2.9)
A 		2
(-3)
A 		13
avr 3.1
(-3) 		3.6
(-2.7) 		5.7
(-1.4) 		3.1
(-3) 		12.9
(3) 		3.3
(-2.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.8
(3)
A 		0.4
(-3)
A 		0.8
(-1.3)
A 		0.6
(-2.1)
A 		1
B 4.8
(3)
A 		0.2
(-3)
A 		0.6
(-2.5)
A 		0.5
(-2.6)
A 		5
C 1.5
(2.4)
A 		1
(-0.6)
A 		0.6
(-3)
A 		1.6
(3)
A 		1
avr 2.7
(3) 		0.5
(-3) 		0.7
(-2.5) 		0.9
(-1.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		10.5
(3)
A 		1.5
(-2.3)
A 		10
B 0.7
(-1.2)
A 		1.6
(3)
A 		0.3
(-3)
A 		0.6
(-1.6)
A 		0.7
(-1.2)
A 		0.7
(-1.2)
A 		1
C 1
(-2.4)
A 		1.5
(-1.4)
A 		3.7
(3)
A 		1.1
(-2.2)
A 		0.7
(-3)
A 		0.7
(-3)
A 		3
avr 0.8
(-2.8) 		1.2
(-2.1) 		1.4
(-1.7) 		0.7
(-3) 		4
(3) 		1
(-2.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19105
Sequence Type Exemplar sequence
Representative Public ID Y42H9AR.B NCBI
Target Description Y42H9AR.B /REP_DB=WormBase Gene ID /WP=CE25274 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60560.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068952
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030217 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8108281:8112186:-1 None
GENEFINDER00000030219 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8108281:8112186:-1 None
NM_068952 NCBI Caenorhabditis elegans Y42H9AR.4 (Y42H9AR.4) mRNA, complete cds. A 
Y42H9AR.4 ENSEMBL cdna:known chromosome:CEL140:IV:8107590:8112186:-1 gene:Y42H9AR.4 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8111972-8112409(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42H9AR.4
Entrez Gene 3565368 Entrez gene
SwissProt Q9N3Y3 EMBL-EBI
WormBase CE37682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60561 Hypothetical protein Y42H9AR.4 [Caenorhabditis elegans] ref|NP_501353.2| Y42H9AR.4 [Caenorhabditis elegans] 0.0
blast CAE58413 Hypothetical protein CBG01544 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177047_AT
tttcctatactatatcatcctctccgctcattcactcacacacactcttgttttcttcgg
ccgtcatcgccgccgcgccgaacacaacgagtctctagattctgtctctcttcaccgtct
tattctccatttctctcacgattctcatcgatctaacaatttttatttatgtctacctaa
ttttcagataactgggaacaatgatacgaagaaagaagtcttcatctggaaaatcttcac
gaaaaaagagaggagtttccagaatcttcttcaccaactcggagacgtggatcagatgca
tgtaatccgcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCTATACTATATCATCCTCTCC 454 669 30 Antisense
CGCCGAACACAACGAGTCTCTAGAT 127 257 105 Antisense
ACGAGTCTCTAGATTCTGTCTCTCT 637 93 116 Antisense
ATTTCTCTCACGATTCTCATCGATC 252 17 158 Antisense
GATTCTCATCGATCTAACAATTTTT 209 431 169 Antisense
CAATTTTTATTTATGTCTACCTAAT 593 179 186 Antisense
GTCTACCTAATTTTCAGATAACTGG 338 469 200 Antisense
GAAAGAAGTCTTCATCTGGAAAATC 36 361 240 Antisense
AAGAGAGGAGTTTCCAGAATCTTCT 648 153 275 Antisense
AACTCGGAGACGTGGATCAGATGCA 590 139 305 Antisense
GGATCAGATGCATGTAATCCGCCTC 391 511 318 Antisense
Sequence Source Affymetrix Proprietary Database