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[177046_s_at]

Description Y42H9AR.F /REP_DB=WormBase Gene ID /WP=CE25278 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60564.1
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 41      6grp_total > 08      4grp_total > 49      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 625
1 2 3 4 range
A 546.8
(-2.2)
P 		1002.6
(3)
P 		969.1
(2.6)
P 		473.7
(-3)
P 		529
B 501.9
(-2.7)
P 		1092.2
(3)
P 		1013.4
(2.2)
P 		466.8
(-3)
P 		625
C 540.4
(-2.8)
P 		989.7
(2.1)
P 		1075.9
(3)
P 		521.5
(-3)
P 		554
avr 529.7
(-2.5) 		1028.2
(3) 		1019.5
(2.9) 		487.3
(-3) 		541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 776
1 2 3 4 5 6 range
A 1128.8
(3)
P 		697.7
(-0.8)
P 		530.3
(-2.3)
P 		531.6
(-2.3)
P 		638.5
(-1.4)
P 		455.9
(-3)
P 		673
B 1001.8
(3)
P 		754.2
(0.5)
P 		770.6
(0.7)
P 		896.1
(2)
P 		487.2
(-2.1)
P 		397.7
(-3)
P 		604
C 890.7
(3)
P 		625.6
(0)
P 		711.4
(1)
P 		644.4
(0.3)
P 		644.4
(0.3)
P 		353.2
(-3)
P 		538
avr 1007.1
(3) 		692.5
(-0.1) 		670.8
(-0.3) 		690.7
(-0.1) 		590
(-1.1) 		402.3
(-3) 		605
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 199.1
(1.2)
P 		217.6
(1.8)
P 		253.3
(3)
P 		69.3
(-3)
P 		184
B 160.1
(-0.9)
P 		269.8
(3)
P 		234.8
(1.8)
P 		99.5
(-3)
P 		170
C 178.9
(-1.1)
P 		284.5
(1.1)
P 		375
(3)
P 		87.9
(-3)
P 		287
avr 179.4
(-0.2) 		257.3
(2.1) 		287.7
(3) 		85.6
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 208.1
(1.2)
P 		248.1
(3)
P 		115.5
(-2.8)
P 		134.8
(-2)
P 		192.7
(0.6)
P 		111
(-3)
P 		137
B 348.6
(3)
P 		251
(0.1)
P 		187.1
(-1.8)
P 		237.4
(-0.3)
P 		198
(-1.5)
P 		148.3
(-3)
P 		200
C 330.1
(3)
P 		190.9
(-0.9)
P 		181.1
(-1.2)
P 		129.6
(-2.7)
P 		208.5
(-0.4)
P 		118.2
(-3)
P 		212
avr 295.6
(3) 		230
(0.7) 		161.2
(-1.7) 		167.3
(-1.5) 		199.7
(-0.4) 		125.8
(-3) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177046_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19109
Sequence Type Exemplar sequence
Representative Public ID Y42H9AR.F NCBI
Target Description Y42H9AR.F /REP_DB=WormBase Gene ID /WP=CE25278 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60564.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068953 NCBI Caenorhabditis elegans Y42H9AR.1 (Y42H9AR.1) mRNA, complete cds. 11/11 None
SNAP00000030218 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8113487:8115352:1 11/11 None
GENEFINDER00000030221 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8113487:8115352:1 11/11 None
Y42H9AR.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:8113374:8115639:1 gene:Y42H9AR.1 11/11 None
Y42H9AR.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8113474:8115640:1 gene:Y42H9AR.1 11/11 A 
Y42H9AR.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8113476:8115649:1 gene:Y42H9AR.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8113492-8115358(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42H9AR.1
Entrez Gene 177604 Entrez gene
SwissProt Q9N3Y1 EMBL-EBI
WormBase CE25278 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584256_AT similar to golgi reassembly stacking protein 2 cfa
CANINE:1584154_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFA.11646.1.A1_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFA.11646.1.A1_S_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFA.11646.1.A2_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFAAFFX.19575.1.S1_AT similar to golgi reassembly stacking protein 2 cfa
DROSOPHILA_2:1628710_AT dm
DROSGENOME1:149079_AT dm
CHICKEN:GGA.7434.1.S1_AT golgi reassembly stacking protein 2, 55kDa gga
HG-U133_PLUS_2:207812_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A:207812_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A_2:207812_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:208843_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A_2:208843_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A:208843_S_AT golgi reassembly stacking protein 2, 55kDa hs
HU35KSUBB:RC_N39148_AT golgi reassembly stacking protein 2, 55kDa hs
U133_X3P:G7661569_3P_A_AT golgi reassembly stacking protein 2, 55kDa hs
U133_X3P:HS.6880.1.S1_3P_A_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A_2:208842_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:208842_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A:208842_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U95AV2:35805_AT golgi reassembly stacking protein 2, 55kDa hs
U133_X3P:HS2.125703.1.S1_3P_S_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:1568935_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:1568936_A_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U95C:52215_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U95AV2:35806_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U95E:78908_AT Golgi reassembly stacking protein 2, 55kDa hs
MOE430A:1460460_A_AT golgi reassembly stacking protein 2 mm
MOUSE430A_2:1460460_A_AT golgi reassembly stacking protein 2 mm
MOUSE430_2:1460460_A_AT golgi reassembly stacking protein 2 mm
MU11KSUBB:W13835_G_AT golgi reassembly stacking protein 2 mm
MG-U74AV2:94876_F_AT golgi reassembly stacking protein 2 mm
MG-U74BV2:164800_AT golgi reassembly stacking protein 2 mm
MG-U74CV2:168522_F_AT golgi reassembly stacking protein 2 mm
MG-U74CV2:168523_AT golgi reassembly stacking protein 2 mm
MOE430A:1424710_A_AT golgi reassembly stacking protein 2 mm
MOUSE430A_2:1424710_A_AT golgi reassembly stacking protein 2 mm
MOUSE430_2:1424710_A_AT golgi reassembly stacking protein 2 mm
MG-U74CV2:168623_I_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
MU19KSUBB:TC30770_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
MU19KSUBC:TC40636_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
MU11KSUBB:W13835_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
RG-U34B:RC_AA965073_AT golgi reassembly stacking protein 2 rn
RG-U34C:RC_AI170750_AT golgi reassembly stacking protein 2 rn
RAE230A:1370325_AT golgi reassembly stacking protein 2 rn
RAT230_2:1370325_AT golgi reassembly stacking protein 2 rn
Protein Similarities
Method ID Description E-Value
blast AAF60564 Hypothetical protein Y42H9AR.1 [Caenorhabditis elegans] ref|NP_501354.1| Y42H9AR.1 [Caenorhabditis elegans] 1.0E-146
blast CAE58414 Hypothetical protein CBG01545 [Caenorhabditis briggsae] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR007583 EMBL-EBI GRASP55/65 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177046_S_AT
aaatggacacgggcactcacatgctgatggcgggcatgggcattctcatgacgatggagg
acacggacattcccatgatggtggacatggccattctcacgagcattctccgtctcctgc
tcctgctccagtgtcttcaccaacacccgttcaacaataccaacaatcatattctcaagc
tcagccacctgttgattactaccaacaacaacaacagcaacaagcttaccagccaccagt
aaatccaccaacaagttatcaagcatatcaaccgccagttccaacttcatattaccctcc
agctgcctctactgcttcaaattcttctggataccaagctccatattattctccaccgtc
gtatcctacgcagcagcaatcatcctatgttccatcagcagtaccaccgatgttttctgc
aacttcagcaccaactccaccaacttcatacgtaaacccaattccaccaccagctcctct
caactttccgatgccatcattaagctcaattggaatcacacaacttgctactccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGACACGGGCACTCACATGCT 421 121 906 Antisense
GATGGTGGACATGGCCATTCTCACG 75 409 982 Antisense
CAATCATATTCTCAAGCTCAGCCAC 606 181 1069 Antisense
GCTCAGCCACCTGTTGATTACTACC 521 301 1084 Antisense
CCAGTTCCAACTTCATATTACCCTC 278 271 1180 Antisense
ACTGCTTCAAATTCTTCTGGATACC 9 99 1216 Antisense
TACCAAGCTCCATATTATTCTCCAC 67 651 1237 Antisense
GCAGCAATCATCCTATGTTCCATCA 26 313 1278 Antisense
TTTCTGCAACTTCAGCACCAACTCC 101 671 1319 Antisense
CAACTCCACCAACTTCATACGTAAA 532 187 1337 Antisense
GGAATCACACAACTTGCTACTCCAC 549 533 1417 Antisense
Sequence Source Affymetrix Proprietary Database