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[177044_at]

Description Y42H9AR.A /REP_DB=WormBase Gene ID /WP=CE25273 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60559.1
Cluster 6grp_total > 50      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 46
(0.6)
A 		66.3
(3)
A 		57.5
(2)
A 		15
(-3)
A 		51
B 21.6
(-3)
A 		55.6
(-0.1)
A 		92
(3)
A 		49
(-0.7)
A 		70
C 34
(-2)
A 		23.8
(-3)
A 		44.5
(-0.9)
A 		82.3
(3)
A 		59
avr 33.9
(-3) 		48.6
(-0.1) 		64.7
(3) 		48.8
(-0.1) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 60.1
(3)
A 		33.5
(-0.3)
A 		11.2
(-3)
A 		35.2
(-0.1)
A 		45
(1.1)
A 		46
(1.3)
A 		49
B 37.3
(-1.1)
A 		34.8
(-1.4)
A 		72.3
(3)
A 		49.9
(0.3)
A 		21.6
(-3)
A 		27.3
(-2.3)
A 		51
C 49.9
(0.3)
A 		70.9
(2)
A 		51.1
(0.4)
A 		82.4
(3)
A 		25.1
(-1.8)
A 		10.7
(-3)
A 		72
avr 49.1
(1.6) 		46.4
(1) 		44.9
(0.6) 		55.8
(3) 		30.6
(-2.4) 		28
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.7
(3)
A 		14.4
(2)
A 		15
(2.3)
A 		2.2
(-3)
A 		15
B 6.9
(-3)
A 		13.7
(-0.2)
A 		21.3
(3)
A 		10.4
(-1.5)
A 		14
C 11.3
(0.1)
A 		6.8
(-3)
A 		15.5
(3)
A 		13.9
(1.9)
A 		9
avr 11.6
(-1) 		11.6
(-1) 		17.3
(3) 		8.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.1
(1.7)
A 		11.9
(2.1)
A 		2.4
(-3)
A 		8.9
(0.5)
A 		13.6
(3)
A 		11.2
(1.7)
A 		11
B 13
(-0.1)
A 		11.6
(-1.1)
A 		17.5
(3)
A 		13.2
(0)
A 		8.8
(-3)
A 		10.2
(-2)
A 		9
C 18.5
(2)
A 		21.6
(3)
A 		13
(0.1)
A 		16.6
(1.3)
A 		8.1
(-1.5)
A 		3.6
(-3)
A 		18
avr 14.2
(2.3) 		15
(3) 		11
(-0.6) 		12.9
(1.1) 		10.2
(-1.3) 		8.3
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19113
Sequence Type Exemplar sequence
Representative Public ID Y42H9AR.A NCBI
Target Description Y42H9AR.A /REP_DB=WormBase Gene ID /WP=CE25273 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60559.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y42H9AR.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y42H9AR.A Y42H9AR.A /REP_DB=WormBase Gene ID /WP=CE25273 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60559.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068953 11/11 Negative Strand Matching Probes A 
SNAP00000030218 11/11 Negative Strand Matching Probes None
GENEFINDER00000030221 11/11 Negative Strand Matching Probes None
Y42H9AR.1.3 11/11 Negative Strand Matching Probes None
Y42H9AR.1.2 11/11 Negative Strand Matching Probes A 
Y42H9AR.1.1 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8114361-8114933(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177044_AT
ggaactggcggttgatatgcttgataacttgttggtggatttactggtggctggtaagct
tgttgctgttgttgttgttggtagtaatcaacaggtggctgagcttgagaatatgattgt
tggtattgttgaacgggtgttggtgaagacactggagcaggagcaggagacggagaatgc
tcgtgagaatggccatgtccaccatcatgggaatgtccgtgtcctccatcgtcatgagaa
tgcccatgcccgccatcagcatgtgagtgcccgtgtccatttgactccgaaactggtggc
tgctgttgagtggcagcaactggaggagcgtacgatgttggaggttgtggaaggaaagct
ggctgtggtggaggtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTGGCGGTTGATATGCTTGAT 135 531 21 Antisense
GGTGGCTGGTAAGCTTGTTGCTGTT 287 499 66 Antisense
GCTCGTGAGAATGGCCATGTCCACC 262 297 199 Antisense
ATGTCCACCATCATGGGAATGTCCG 130 49 215 Antisense
CGTGTCCTCCATCGTCATGAGAATG 410 245 238 Antisense
TCGTCATGAGAATGCCCATGCCCGC 663 603 249 Antisense
CCATCAGCATGTGAGTGCCCGTGTC 415 269 273 Antisense
TGTCCATTTGACTCCGAAACTGGTG 606 555 294 Antisense
AAACTGGTGGCTGCTGTTGAGTGGC 458 125 310 Antisense
GGAGCGTACGATGTTGGAGGTTGTG 606 497 345 Antisense
GAAAGCTGGCTGTGGTGGAGGTGGA 80 359 374 Antisense
Sequence Source Affymetrix Proprietary Database