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[177041_at]

Description Y55D5A.A /REP_DB=WormBase Gene ID /WP=CE22512 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23450.1
Cluster 6grp_total > 47      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 10.3
(-3)
A 		36.5
(-0.2)
A 		13.6
(-2.7)
A 		67.4
(3)
A 		57
B 8.2
(-2.9)
A 		57.9
(1.2)
A 		80.3
(3)
A 		6.5
(-3)
A 		74
C 14.9
(-2.5)
A 		8.3
(-3)
A 		9.9
(-2.9)
A 		82.4
(3)
A 		74
avr 11.1
(-3) 		34.2
(0.4) 		34.6
(0.4) 		52.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 84.8
(1.6)
A 		50.6
(-0.4)
A 		66.7
(0.5)
A 		13
(-2.6)
A 		6.6
(-3)
A 		108.4
(3)
A 		102
B 153.5
(3)
A 		76.5
(-0.5)
A 		73.3
(-0.7)
A 		46.2
(-1.9)
A 		21.9
(-3)
A 		100.8
(0.6)
A 		132
C 64.2
(0.6)
A 		61.9
(0.5)
A 		13.9
(-2.6)
A 		49.7
(-0.3)
A 		6.8
(-3)
A 		102.2
(3)
A 		95
avr 100.8
(2.8) 		63
(0.3) 		51.3
(-0.4) 		36.3
(-1.4) 		11.8
(-3) 		103.8
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.8
(-2.8)
A 		7.9
(1.1)
A 		3.6
(-3)
A 		9.9
(3)
A 		6
B 2.6
(-2.6)
A 		14.3
(1.5)
A 		18.6
(3)
A 		1.4
(-3)
A 		17
C 4.9
(-1.7)
A 		2.4
(-3)
A 		3.4
(-2.5)
A 		13.9
(3)
A 		12
avr 3.8
(-3) 		8.2
(2.6) 		8.5
(3) 		8.4
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 15.6
(0.3)
A 		18
(0.9)
A 		14.5
(0.1)
A 		3.3
(-2.7)
A 		2
(-3)
A 		26.4
(3)
A 		24
B 53.4
(3)
A 		25.5
(-0.8)
A 		17.8
(-1.8)
A 		12.2
(-2.6)
A 		8.9
(-3)
A 		37.6
(0.9)
A 		45
C 23.8
(1.1)
A 		18.9
(0.1)
A 		3.5
(-2.8)
A 		10
(-1.5)
A 		2.2
(-3)
A 		34.2
(3)
A 		32
avr 30.9
(2.6) 		20.8
(0.5) 		11.9
(-1.4) 		8.5
(-2.1) 		4.4
(-3) 		32.7
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177041_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18937
Sequence Type Exemplar sequence
Representative Public ID Y55D5A.A NCBI
Target Description Y55D5A.A /REP_DB=WormBase Gene ID /WP=CE22512 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23450.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065250 NCBI Caenorhabditis elegans Y55D5A.6 (Y55D5A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000010556 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3042716:3047115:-1 11/11 None
Y55D5A.6 ENSEMBL cdna:known chromosome:CEL140:III:3042716:3045773:-1 gene:Y55D5A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3042715-3045773(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55D5A.6
Entrez Gene 190305 Entrez gene
SwissProt Q7KWZ4 EMBL-EBI
WormBase CE22512 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29949 Hypothetical protein Y55D5A.6 [Caenorhabditis elegans] ref|NP_497651.1| Y55D5A.6 [Caenorhabditis elegans] 1.0E-163
blast AAK29949 Hypothetical protein Y55D5A.6 [Caenorhabditis elegans] ref|NP_497651.1| Y55D5A.6 [Caenorhabditis elegans] 1.0E-162
blast CAE57497 Hypothetical protein CBG00469 [Caenorhabditis briggsae] 1.0E-140
blast CAE57497 Hypothetical protein CBG00469 [Caenorhabditis briggsae] 1.0E-109
blast CAA91480 Hypothetical protein T04F8.4 [Caenorhabditis elegans] ref|NP_509946.1| T04F8.4 [Caenorhabditis elegans] 8.0E-19
blast CAB16488 Hypothetical protein Y53C12B.6 [Caenorhabditis elegans] ref|NP_496097.1| Y53C12B.6 [Caenorhabditis elegans] 8.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 2.5E-7
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 2.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497651.1 1 256-278
Y55D5A.6 1 256-278
GENEFINDER00000010556 1 382-404
Sequence
Target Sequence 
>C. ELEGANS:177041_AT
aactcgagaggtgctctgccgagtcagaaaacggaaaagggatgaaaattctggaaaatg
gatgctctttagacgaggagcttatttctgacaccacgtattcacaggatttctcgaaaa
tttatgcgacttcgctggctttcaaatttccagaggaatatgaggtttttatcagatgtg
cagtgaggacttgtgtgaaaaaaaccgagcacctagaaatcataaatggcgaggaagagg
acctgtgctcggcgagcaacaattgcggatttgtctcatttgaatcgagtcagagaagtc
ggcgacaacttgtagggaaaaataacaacaacacccgtaccgacatcatctacgtgaacg
gtagattccgtgtggaaaaacaaagttccccgcaagaagcccgtgccacgtcacaaacag
agttctgtatgcctgacgtcatctattacctgggactgtctacagtagtcatttgctacc
tgattaccatctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCGAGAGGTGCTCTGCCGAGTC 357 141 338 Antisense
GAGGAGCTTATTTCTGACACCACGT 532 403 412 Antisense
ACACCACGTATTCACAGGATTTCTC 179 109 428 Antisense
CGACTTCGCTGGCTTTCAAATTTCC 700 251 464 Antisense
GCGAGGAAGAGGACCTGTGCTCGGC 517 289 566 Antisense
GTGCTCGGCGAGCAACAATTGCGGA 205 479 582 Antisense
CAATTGCGGATTTGTCTCATTTGAA 48 181 597 Antisense
ACCCGTACCGACATCATCTACGTGA 94 89 670 Antisense
CAGAGTTCTGTATGCCTGACGTCAT 563 205 755 Antisense
GACGTCATCTATTACCTGGGACTGT 84 379 772 Antisense
CATTTGCTACCTGATTACCATCTCG 228 215 807 Antisense
Sequence Source Affymetrix Proprietary Database