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[177039_at]

Description Y48G1A.D /REP_DB=WormBase Gene ID /WP=CE22167 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60682.1
Cluster 6grp_total > 01      4grp_total > 42      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 58
(1.5)
A 		53.8
(1.1)
A 		10.9
(-3)
A 		73.4
(3)
A 		63
B 11.6
(-3)
A 		57
(2)
A 		66.1
(3)
A 		17.6
(-2.3)
A 		55
C 15.4
(-2.6)
A 		72.2
(3)
A 		28.9
(-1.3)
A 		11.6
(-3)
A 		61
avr 28.3
(-3) 		61
(3) 		35.3
(-1.7) 		34.2
(-1.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 11.7
(-2)
A 		14.9
(-1.2)
A 		11.7
(-2)
A 		8
(-3)
A 		10.7
(-2.3)
A 		30.9
(3)
A 		23
B 16.2
(-1.7)
A 		51
(2.9)
A 		6.7
(-3)
A 		51.8
(3)
A 		7.3
(-2.9)
A 		6.6
(-3)
A 		45
C 6.8
(-0.8)
A 		11.1
(2.9)
A 		9.4
(1.5)
A 		7.8
(0.1)
A 		11.2
(3)
A 		4.2
(-3)
A 		7
avr 11.6
(-2.2) 		25.7
(3) 		9.3
(-3) 		22.5
(1.8) 		9.7
(-2.9) 		13.9
(-1.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.1
(3)
A 		11.7
(-0.1)
A 		2.9
(-3)
A 		10.7
(-0.4)
A 		18
B 3.7
(-3)
A 		14.1
(2.4)
A 		15.3
(3)
A 		3.7
(-3)
A 		12
C 5.1
(-2)
A 		20.8
(3)
A 		10.1
(-0.4)
A 		2
(-3)
A 		19
avr 10
(-0.3) 		15.5
(3) 		9.4
(-0.7) 		5.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.2
(-2.8)
A 		5.3
(0.6)
A 		2.5
(-2.5)
A 		2
(-3)
A 		3.2
(-1.7)
A 		7.5
(3)
A 		6
B 5.6
(-1.4)
A 		17
(3)
A 		1.6
(-3)
A 		13.7
(1.7)
A 		3
(-2.5)
A 		2.5
(-2.6)
A 		15
C 2.5
(0)
A 		3.4
(2.5)
A 		2.4
(-0.3)
A 		1.6
(-2.5)
A 		3.6
(3)
A 		1.4
(-3)
A 		2
avr 3.4
(-1.9) 		8.6
(3) 		2.2
(-3) 		5.8
(0.4) 		3.3
(-2) 		3.8
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18875
Sequence Type Exemplar sequence
Representative Public ID Y48G1A.D NCBI
Target Description Y48G1A.D /REP_DB=WormBase Gene ID /WP=CE22167 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60682.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G1A.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G1A.D Y48G1A.D /REP_DB=WormBase Gene ID /WP=CE22167 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60682.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058315 11/11 Negative Strand Matching Probes A 
SNAP00000006798 11/11 Negative Strand Matching Probes None
GENEFINDER00000006803 11/11 Negative Strand Matching Probes None
Y48G1A.5 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:320015-322254(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177039_AT
gatctcccccagacatggaagcatttgcgcctcgaatcttcggcagagacctcgcgcaag
atcgatggctccacggcgtcgagttcctacatcggtaccctcgatgtctcgcttcatata
atccagtggctcatcctcgaacagttccatatcctgttgacgaagcagaaggttctgaac
gcacacgttctcggcgagagtcttcagaacgccttcaccagtgaagtgtccctcgtagta
ctgtcgctggctgaccatcgacagaaattccagcgcggcgcacaccatcgtatcgtatcg
agtgtcggggccggtagacttgagcagattccagacggcaaggatgatgtcgggcacgaa
ctcggagatctcctcctcgtagcgttgcgagtagagcgtgaagatctcacagatctcgtg
cttaagctcgtccagagttgtaggttctcccgagttggaggtctgcgtcggcgcgtcgat
ttgcacgagatgcaagaagtgtggcatccagtccttgagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCCCCCAGACATGGAAGCATT 82 419 1192 Antisense
AGACCTCGCGCAAGATCGATGGCTC 161 71 1238 Antisense
GTCTCGCTTCATATAATCCAGTGGC 260 471 1297 Antisense
GCGAGAGTCTTCAGAACGCCTTCAC 529 289 1385 Antisense
TCACCAGTGAAGTGTCCCTCGTAGT 84 625 1406 Antisense
TACTGTCGCTGGCTGACCATCGACA 81 645 1430 Antisense
GGGCCGGTAGACTTGAGCAGATTCC 24 491 1499 Antisense
CTCCTCCTCGTAGCGTTGCGAGTAG 669 233 1561 Antisense
ACAGATCTCGTGCTTAAGCTCGTCC 316 107 1600 Antisense
GTCCAGAGTTGTAGGTTCTCCCGAG 294 477 1621 Antisense
AAGTGTGGCATCCAGTCCTTGAGAT 514 159 1688 Antisense
Sequence Source Affymetrix Proprietary Database