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[177038_at]

Description Y94H6A.D /REP_DB=WormBase Gene ID /WP=CE25631 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60890.1
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 24      6grp_total > 20      4grp_total > 32      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5017
1 2 3 4 range
A 1125.2
(-3)
P 		1837.3
(-2)
P 		5253.1
(3)
P 		4559.9
(2)
P 		4128
B 719.9
(-3)
P 		2545.3
(-0.8)
P 		5319.9
(2.6)
P 		5648.5
(3)
P 		4929
C 1273.5
(-3)
P 		2151.9
(-1.8)
P 		5737.1
(3)
P 		3952.3
(0.6)
P 		4464
avr 1039.5
(-3) 		2178.2
(-1.4) 		5436.7
(3) 		4720.2
(2) 		4397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3548
1 2 3 4 5 6 range
A 1331.6
(-3)
P 		3906
(1.4)
P 		4879.9
(3)
P 		2741.9
(-0.6)
P 		2027.4
(-1.8)
P 		2318.5
(-1.3)
P 		3548
B 3254.3
(-0.7)
P 		4807.8
(3)
P 		4433.5
(2.1)
P 		3078.9
(-1.2)
P 		2313.4
(-3)
P 		2857.6
(-1.7)
P 		2494
C 2993.8
(-0.6)
P 		4441.2
(3)
P 		3683
(1.1)
P 		3134.6
(-0.3)
P 		2036.9
(-3)
P 		2851.3
(-1)
P 		2404
avr 2526.6
(-1.9) 		4385
(3) 		4332.1
(2.9) 		2985.1
(-0.7) 		2125.9
(-3) 		2675.8
(-1.5) 		2259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1770
1 2 3 4 range
A 409.7
(-2.9)
P 		398.8
(-3)
P 		1373.3
(3)
P 		667.5
(-1.3)
P 		975
B 229.6
(-3)
P 		628.6
(-0.6)
P 		1232.7
(3)
P 		1203.7
(2.8)
P 		1003
C 421.6
(-3)
P 		618.7
(-2.3)
P 		1999.5
(3)
P 		666.4
(-2.1)
P 		1578
avr 353.6
(-3) 		548.7
(-2) 		1535.2
(3) 		845.9
(-0.5) 		1182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1355
1 2 3 4 5 6 range
A 245.5
(-3)
P 		1389.2
(3)
P 		1062.7
(1.3)
P 		695.4
(-0.6)
P 		611.8
(-1.1)
P 		564.5
(-1.3)
P 		1144
B 1132.3
(-0.6)
P 		1600.3
(3)
P 		1076.6
(-1)
P 		815.5
(-3)
P 		939.9
(-2)
P 		1065.6
(-1.1)
P 		785
C 1109.7
(1)
P 		1355.1
(3)
P 		937.4
(-0.5)
P 		630.4
(-3)
P 		659.1
(-2.8)
P 		954.5
(-0.3)
P 		725
avr 829.2
(-2.1) 		1448.2
(3) 		1025.6
(-0.5) 		713.8
(-3) 		736.9
(-2.8) 		861.5
(-1.8) 		734
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19131
Sequence Type Exemplar sequence
Representative Public ID Y94H6A.D NCBI
Target Description Y94H6A.D /REP_DB=WormBase Gene ID /WP=CE25631 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60890.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067845
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003298 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2713282:2716568:-1 None
Y94H6A.7 ENSEMBL cdna:known chromosome:CEL140:IV:2712001:2715881:-1 gene:Y94H6A.7 None
SNAP00000003282 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2712011:2716568:-1 None
NM_067845 NCBI Caenorhabditis elegans Y94H6A.7 (Y94H6A.7) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028418 7/11 Cross Hyb Matching Probes None
SNAP00000003281 7/11 Cross Hyb Matching Probes None
GENEFINDER00000003290 7/11 Cross Hyb Matching Probes None
Y94H6A.10 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2710123-2716574(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y94H6A.7
Entrez Gene 177055 Entrez gene
SwissProt Q9N2W8 EMBL-EBI
WormBase CE36903 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246015_AT expressed protein at
CANINE:1587285_AT similar to CG14903-PA cfa
CANINE_2:CFA.14947.1.A1_AT similar to CG14903-PA cfa
CANINE_2:CFAAFFX.242.1.S1_S_AT similar to CG14903-PA cfa
DROSOPHILA_2:1636660_AT dm
DROSGENOME1:150028_AT dm
CHICKEN:GGA.10324.1.S1_A_AT similar to ENSANGP00000018456 gga
HU35KSUBA:RC_AA025887_AT similar to CG14903-PA hs
U133_X3P:HS.293943.1.A1_3P_AT similar to CG14903-PA hs
HG-U133_PLUS_2:226243_AT similar to CG14903-PA hs
HG-U133B:226243_AT similar to CG14903-PA hs
HG-U95B:58298_AT similar to CG14903-PA hs
HG-U95B:58300_G_AT similar to CG14903-PA hs
HG-U95C:60028_S_AT similar to CG14903-PA hs
HG-U95C:60029_I_AT similar to CG14903-PA hs
HG-U95C:61777_AT similar to CG14903-PA hs
MOE430A:1455207_AT similar to RIKEN cDNA 2410017P09 gene mm
MOUSE430A_2:1455207_AT similar to RIKEN cDNA 2410017P09 gene mm
MOUSE430_2:1455207_AT similar to RIKEN cDNA 2410017P09 gene mm
MG-U74BV2:165257_R_AT similar to RIKEN cDNA 2410017P09 gene mm
MG-U74BV2:165258_R_AT similar to RIKEN cDNA 2410017P09 gene mm
RG-U34C:RC_AI237593_AT similar to CG14903-PA rn
RAE230A:1373556_AT similar to CG14903-PA rn
RAT230_2:1373556_AT similar to CG14903-PA rn
Protein Similarities
Method ID Description E-Value
blast AAF60890 Hypothetical protein Y94H6A.7 [Caenorhabditis elegans] ref|NP_500246.3| Y94H6A.7 [Caenorhabditis elegans] 1.0E-119
blast CAE68238 Hypothetical protein CBG13912 [Caenorhabditis briggsae] 1.0E-115
blast AAF60890 Hypothetical protein Y94H6A.7 [Caenorhabditis elegans] ref|NP_500246.3| Y94H6A.7 [Caenorhabditis elegans] 1.0E-113
blast CAE68238 Hypothetical protein CBG13912 [Caenorhabditis briggsae] 5.0E-93
blast CAE68238 Hypothetical protein CBG13912 [Caenorhabditis briggsae] 1.0E-58
blast AAF60890 Hypothetical protein Y94H6A.7 [Caenorhabditis elegans] ref|NP_500246.3| Y94H6A.7 [Caenorhabditis elegans] 5.0E-45
blast AAF54981 CG33747-PC, isoform C [Drosophila melanogaster] gb|AAN13590.2| CG33747-PB, isoform B [Drosophila melanogaster] gb|AAL90215.1| AT28881p [Drosophila melanogaster] ref|NP_731855.2| CG31311-PC, isoform C [Drosophila melanogaster] ref|NP_731854.2| CG31311-PA, isoform A [Drosophila melanogaster] sp|P82891|PPA2_DROME Low molecular weight phosphotyrosine protein phosphatase 2 (Low molecular weight cytosolic acid phosphatase 2) (PTPase 2) 8.0E-28
blast EAA05379 ENSANGP00000011124 [Anopheles gambiae str. PEST] ref|XP_309631.2| ENSANGP00000011124 [Anopheles gambiae str. PEST] 6.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000106 EMBL-EBI Low molecular weight phosphotyrosine protein phosphatase 1.0E-26
Pfam IPR000106 EMBL-EBI Low molecular weight phosphotyrosine protein phosphatase 3.8E-20
Sequence
Target Sequence 
>C. ELEGANS:177038_AT
cattatcttgctggaactacgttatatcttacaattccctacagtacgatatttctttgt
ttcagcagaatggagagtcgtgttcgtccgataataatcaacgacccaaatcagttgtgt
gtttacatcaatcttcatgacgaaaagaaaccagagagctcgagcaagtcgaaaagtcca
ttgaaagatggacccgattcccaaagaagcaacatccgtagaaagcttacaacgcaaatg
caaaagcaaggctgggaatgtgaagctcacattacctcgttcattttttacaaggacatg
gcatcagacgacaaaaaatcagatccagttgaaaaagctctcaaagaatcagatctagtt
gaaaaagctcacaaagaaatatctgtcgcgattgaagaaacaacgaaaacttatgaggga
gcacaatttcagtacggaattatgaggccacttacgcgtattagaatgtttgaagcccgc
caaactgttgaagagcagcaaaacaaggctcatgaagaaggtatgaagaccgaaatcaag
gaggaaatcgtcgaggaaggcagcccgttcaatttgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTATCTTGCTGGAACTACGTTAT 326 215 796 Antisense
GTTATATCTTACAATTCCCTACAGT 188 447 816 Antisense
AGTACGATATTTCTTTGTTTCAGCA 232 63 838 Antisense
AGAATGGAGAGTCGTGTTCGTCCGA 566 75 862 Antisense
GAAAGATGGACCCGATTCCCAAAGA 124 361 978 Antisense
CTCACATTACCTCGTTCATTTTTTA 117 229 1061 Antisense
GAGGGAGCACAATTTCAGTACGGAA 153 403 1210 Antisense
AATTATGAGGCCACTTACGCGTATT 220 175 1233 Antisense
TGAAGCCCGCCAAACTGTTGAAGAG 668 573 1266 Antisense
GAAATCGTCGAGGAAGGCAGCCCGT 431 357 1339 Antisense
GAAGGCAGCCCGTTCAATTTGAATG 678 333 1351 Antisense
Sequence Source Affymetrix Proprietary Database