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[177037_at]

Description H08J11.B /REP_DB=WormBase Gene ID /WP=CE20946 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35971.1
Cluster 6grp_total > 25      4grp_total > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 22.6
(-3)
A 		43
(-1.6)
A 		40.4
(-1.8)
A 		111.6
(3)
P 		89
B 48.4
(1.6)
A 		18.1
(-3)
A 		58
(3)
P 		41.5
(0.5)
A 		40
C 66.8
(-0.8)
A 		37.4
(-2.5)
A 		27.9
(-3)
A 		136.1
(3)
A 		108
avr 45.9
(-1.8) 		32.8
(-3) 		42.1
(-2.1) 		96.4
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 45.5
(0.8)
A 		67
(3)
A 		50.5
(1.3)
A 		20
(-1.9)
A 		9.5
(-3)
A 		20.3
(-1.9)
A 		58
B 53.6
(3)
A 		24
(-0.4)
A 		1.5
(-3)
A 		22.5
(-0.6)
A 		35.1
(0.9)
P 		7.3
(-2.3)
A 		52
C 48.7
(2)
A 		50.6
(2.4)
A 		53.6
(3)
M 		29.4
(-1.9)
A 		24.1
(-3)
A 		40.4
(0.3)
M 		30
avr 49.3
(3) 		47.2
(2.5) 		35.2
(-0.2) 		24
(-2.7) 		22.9
(-3) 		22.7
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.2
(-3)
A 		9.3
(-2.2)
A 		10.6
(-1.2)
A 		16.3
(3)
P 		8
B 15.4
(3)
A 		4.5
(-3)
A 		13.4
(1.9)
P 		8.8
(-0.6)
A 		11
C 22.1
(2.6)
A 		10.7
(-2.5)
A 		9.7
(-3)
A 		22.9
(3)
A 		13
avr 15.2
(2.4) 		8.2
(-3) 		11.2
(-0.7) 		16
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.4
(-1.4)
A 		23.8
(3)
A 		11
(-0.7)
A 		5.1
(-2.4)
A 		2.9
(-3)
A 		4.9
(-2.4)
A 		21
B 18.7
(3)
A 		8
(-0.5)
A 		0.4
(-3)
A 		6
(-1.2)
A 		14.3
(1.6)
P 		2.7
(-2.2)
A 		18
C 18
(3)
A 		15.5
(1.8)
A 		13.6
(0.8)
M 		5.9
(-3)
A 		7.8
(-2.1)
A 		13.5
(0.8)
M 		12
avr 15
(2.5) 		15.8
(3) 		8.3
(-1.5) 		5.7
(-3) 		8.3
(-1.5) 		7
(-2.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19559
Sequence Type Exemplar sequence
Representative Public ID H08J11.B NCBI
Target Description H08J11.B /REP_DB=WormBase Gene ID /WP=CE20946 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35971.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077133
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H08J11.2 ENSEMBL cdna:known chromosome:CEL140:X:9087558:9097392:1 gene:H08J11.2 None
NM_077133 NCBI Caenorhabditis elegans H08J11.2 (H08J11.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9094678-9096674(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H08J11.2
Entrez Gene 3565988 Entrez gene
SwissProt Q689A0 EMBL-EBI
WormBase CE37248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05565 Hypothetical protein H08J11.2 [Caenorhabditis elegans] ref|NP_509534.2| H08J11.2 [Caenorhabditis elegans] 1.0E-158
blast CAE57284 Hypothetical protein CBG00189 [Caenorhabditis briggsae] 9.0E-89
Sequence
Target Sequence 
>C. ELEGANS:177037_AT
gatacctttcgatccaacaacttctgaaattcatactcagaaaatgtcccaatttatagt
gctcgccgacgccgatcgtgatcaagaggaagaactggttttcaacgaggagcgccgcaa
aacagtgaccataaacctgaagaattgtccccagttgcatatcgaattgccttttgaatt
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCTTTCGATCCAACAACTTCT 494 423 15 Antisense
ATTCATACTCAGAAAATGTCCCAAT 340 11 43 Antisense
TGTCCCAATTTATAGTGCTCGCCGA 530 555 59 Antisense
GCCGACGCCGATCGTGATCAAGAGG 378 285 79 Antisense
GAACTGGTTTTCAACGAGGAGCGCC 603 347 106 Antisense
GTTTTCAACGAGGAGCGCCGCAAAA 434 447 112 Antisense
AGCGCCGCAAAACAGTGACCATAAA 40 83 125 Antisense
CCATAAACCTGAAGAATTGTCCCCA 230 269 143 Antisense
GAAGAATTGTCCCCAGTTGCATATC 14 341 153 Antisense
TTGTCCCCAGTTGCATATCGAATTG 164 703 159 Antisense
GCATATCGAATTGCCTTTTGAATTA 44 309 171 Antisense
Sequence Source Affymetrix Proprietary Database