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[177036_at]

Description Y54G2A.L /REP_DB=WormBase Gene ID /WP=CE25454 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59572.1
Cluster 6grp_total > 02      4grp_total > 45      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 35.8
(-3)
A 		80.9
(3)
A 		58.7
(0)
A 		41.3
(-2.3)
A 		45
B 64.3
(3)
P 		35.3
(-2.9)
A 		34.6
(-3)
A 		34.7
(-3)
A 		30
C 59
(3)
M 		35.7
(-1.6)
A 		28.4
(-3)
A 		38.4
(-1)
A 		31
avr 53
(3) 		50.6
(2) 		40.6
(-2) 		38.1
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 24
(1.7)
A 		28
(2.9)
A 		19.2
(0.2)
A 		28.4
(3)
A 		8.4
(-3)
A 		9.8
(-2.6)
A 		20
B 32.3
(2.5)
A 		21.7
(-0.3)
A 		11.4
(-3)
A 		20.4
(-0.6)
A 		34.2
(3)
A 		26.4
(0.9)
A 		23
C 28.1
(-0.7)
A 		61
(3)
A 		26.9
(-0.9)
A 		8.3
(-3)
A 		41.4
(0.8)
A 		10.5
(-2.7)
A 		53
avr 28.1
(0.5) 		36.9
(3) 		19.2
(-2) 		19
(-2) 		28
(0.5) 		15.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13
(0.6)
A 		17.6
(3)
A 		15.4
(1.9)
A 		6
(-3)
A 		12
B 20.5
(3)
P 		8.7
(-2.4)
A 		8
(-2.7)
A 		7.4
(-3)
A 		13
C 19.5
(3)
M 		10.3
(-1.2)
A 		9.9
(-1.4)
A 		6.5
(-3)
A 		13
avr 17.7
(3) 		12.2
(0) 		11.1
(-0.6) 		6.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.4
(-1.4)
A 		10
(3)
A 		4.2
(-1.6)
A 		7.2
(0.8)
A 		2.5
(-2.9)
A 		2.4
(-3)
A 		8
B 11.2
(1.5)
A 		7.2
(-0.6)
A 		2.8
(-3)
A 		5.4
(-1.6)
A 		13.9
(3)
A 		9.8
(0.8)
A 		11
C 10.4
(0.1)
A 		18.6
(3)
A 		6.8
(-1.2)
A 		1.7
(-3)
A 		13.4
(1.2)
A 		3.5
(-2.4)
A 		17
avr 8.7
(0.4) 		11.9
(3) 		4.6
(-3) 		4.8
(-2.8) 		9.9
(1.4) 		5.2
(-2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19203
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.L NCBI
Target Description Y54G2A.L /REP_DB=WormBase Gene ID /WP=CE25454 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59572.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028327, NM_001028325
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000036601 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2964426:2969857:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028325 3/11 Cross Hyb Matching Probes None
NM_001028327 3/11 Cross Hyb Matching Probes None
SNAP00000036513 3/11 Cross Hyb Matching Probes None
Y54G2A.25a 3/11 Cross Hyb Matching Probes A 
Y54G2A.25c 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2964431-2967199(-) 80.33 96.71
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59572 L1 cam adhesion molecule homolog protein 2, isoform a [Caenorhabditis elegans] ref|NP_001023496.1| L1 CAM ADhesion molecule homolog family member (lad-2) [Caenorhabditis elegans] gb|AAL60232.1| immunoglobulin domain-containing protein Y54G2A.25 [Caenorhabditis elegans] 0.0
blast CAE59876 Hypothetical protein CBG03355 [Caenorhabditis briggsae] 0.0
blast XP_395296 PREDICTED: similar to ENSANGP00000001591 [Apis mellifera] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.0E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.8E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0029
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000036601 1 682-704
Sequence
Target Sequence 
>C. ELEGANS:177036_AT
ttgttaattacacggctgaaagctcaaaaacatggttccagtccgagattatatatcttc
catatacggagattacaatacgaaacctaaaagaagaccagaaatattttatgcaaggaa
ttgcaaaagacgggccaagaagaagtgaatccgtattcctcccgattaaaactttaaatc
gagattatgcaaatcgattaaaagaggactctctgagaagtgccgcctggtttattgcag
ttcttggcgttcttggcattggtctattcacaatttgtctcactttttgctgtggaaaca
agaatcgacaggagaaatttgcagtccggaggaagtttgcagatttgccagaaattttca
attccggcaaactgccggtttgccaaattgccagaaattttcaattccggcaaactgccg
tttgcagatttgccggtagttttcaattccggcaaatagccgatttatcgatttgccgga
aattttcaattgcggcaacttaccggtttgccagtttgccagaaattttaaattccggca
aactgcaggaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTAATTACACGGCTGAAAGCTC 370 603 419 Antisense
AAGCTCAAAAACATGGTTCCAGTCC 389 61 438 Antisense
ACATGGTTCCAGTCCGAGATTATAT 553 107 448 Antisense
GTCCGGAGGAAGTTTGCAGATTTGC 637 475 742 Antisense
AACTGCCGGTTTGCCAAATTGCCAG 238 141 788 Antisense
CAAACTGCCGTTTGCAGATTTGCCG 580 191 829 Antisense
GCAGATTTGCCGGTAGTTTTCAATT 248 311 842 Antisense
AAATAGCCGATTTATCGATTTGCCG 579 115 872 Antisense
CAATTGCGGCAACTTACCGGTTTGC 546 179 905 Antisense
TTACCGGTTTGCCAGTTTGCCAGAA 482 681 918 Antisense
AAATTCCGGCAAACTGCAGGAAATC 310 113 948 Antisense
Sequence Source Affymetrix Proprietary Database