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[177034_s_at]

Description Y92C3B.A /REP_DB=WormBase Gene ID /WP=CE25625 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60884.1
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 75      6grp_total > 36      4grp_total > 61      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 785
1 2 3 4 range
A 1423.8
(3)
P 		1119
(0.1)
P 		1232.6
(1.2)
P 		799.4
(-3)
P 		624
B 1461.7
(3)
P 		1210.2
(1)
P 		1117.3
(0.2)
P 		723.7
(-3)
P 		738
C 1227.7
(2.6)
P 		1264.2
(3)
P 		1148
(1.8)
P 		676.4
(-3)
P 		588
avr 1371.1
(3) 		1197.8
(1.4) 		1166
(1.1) 		733.2
(-3) 		638

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 569
1 2 3 4 5 6 range
A 890.1
(0.1)
P 		1113.1
(3)
P 		678.7
(-2.7)
P 		844.9
(-0.5)
P 		657.8
(-3)
P 		1087.5
(2.7)
P 		455
B 805.9
(3)
P 		806.4
(3)
P 		655.4
(-1.6)
P 		679.3
(-0.9)
P 		609.8
(-3)
P 		660.5
(-1.5)
P 		197
C 1178.6
(3)
P 		740.4
(-1.9)
P 		1073.5
(1.8)
P 		638.4
(-3)
P 		845.2
(-0.7)
P 		813.8
(-1.1)
P 		540
avr 958.2
(3) 		886.6
(1.3) 		802.5
(-0.7) 		720.9
(-2.6) 		704.3
(-3) 		853.9
(0.5) 		254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 518.4
(3)
P 		242.9
(-1.1)
P 		322.2
(0.1)
P 		117
(-3)
P 		401
B 466.1
(3)
P 		298.9
(-0.2)
P 		258.9
(-1)
P 		154.2
(-3)
P 		312
C 406.4
(3)
P 		363.5
(2.1)
P 		400.1
(2.9)
P 		114
(-3)
P 		292
avr 463.6
(3) 		301.8
(0.1) 		327.1
(0.6) 		128.4
(-3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 164.1
(-2.6)
P 		395.9
(3)
P 		147.8
(-3)
P 		214.3
(-1.4)
P 		198.5
(-1.8)
P 		264.8
(-0.2)
P 		248
B 280.4
(3)
P 		268.4
(2.4)
P 		159.1
(-3)
P 		179.9
(-2)
P 		247.8
(1.4)
P 		246.3
(1.3)
P 		121
C 436.9
(3)
P 		225.9
(-1.1)
P 		273.2
(-0.2)
P 		128.4
(-3)
P 		273.5
(-0.2)
P 		272.4
(-0.2)
P 		309
avr 293.8
(2.9) 		296.7
(3) 		193.4
(-2.1) 		174.2
(-3) 		239.9
(0.2) 		261.2
(1.3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177034_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19000
Sequence Type Exemplar sequence
Representative Public ID Y92C3B.A NCBI
Target Description Y92C3B.A /REP_DB=WormBase Gene ID /WP=CE25625 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60884.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027796(11), NM_001027799(11), NM_001027798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027796 NCBI Caenorhabditis elegans U2AF splicing factor family member (uaf-1) (uaf-1) mRNA, complete cds. 11/11 None
NM_001027799 NCBI Caenorhabditis elegans U2AF splicing factor family member (uaf-1) (uaf-1) mRNA, complete cds. 11/11 None
NM_001027798 NCBI Caenorhabditis elegans U2AF splicing factor family member (uaf-1) (uaf-1) mRNA, complete cds. 11/11 None
GENEFINDER00000007835 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1063006:1076543:-1 11/11 None
Y92C3B.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:1062781:1076543:-1 gene:Y92C3B.2 11/11 A 
Y92C3B.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:1062783:1076543:-1 gene:Y92C3B.2 11/11 A 
Y92C3B.2c ENSEMBL cdna:known chromosome:CEL140:III:1063006:1076543:-1 gene:Y92C3B.2 11/11 A 
Y92C3B.2d ENSEMBL cdna:known chromosome:CEL140:III:1063006:1076543:-1 gene:Y92C3B.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175270 4 3 NM_001027796 177034_s_at (11)
NM_001027798 177034_s_at (11)
NM_001027799 177034_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1070386-1080469(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y92C3B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00879 U2af splicing factor protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022969.1| U2AF splicing factor family member (uaf-1) [Caenorhabditis elegans] 0.0
blast AAM44400 U2af splicing factor protein 1, isoform d [Caenorhabditis elegans] ref|NP_001022970.1| U2AF splicing factor family member (uaf-1) [Caenorhabditis elegans] 0.0
blast AAK29989 U2af splicing factor protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022967.1| U2AF splicing factor family member (uaf-1) [Caenorhabditis elegans] sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) gb|AAC26982.1| splicing factor U2AF65 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-17
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.2E-7
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-17
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.2E-7
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-17
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.2E-7
Sequence
Target Sequence 
>C. ELEGANS:177034_S_AT
aagtaccgattctgggatgttccgccgactggattcgagacaactacaccgatggagtac
aagaatatgcaggcggctggacaggttccacgtggatctgtacagtctgcagtgcccgtt
gttggcccatcagtgacttgtcaatcacgtcgtctctacgttggaaatattccgttcgga
tgcaatgaagaagctatgctcgactttttcaatcaacaaatgcacctctgtggattggct
caagcgcctggaaatccgattcttctgtgccaaataaatttggacaaaaatttcgcattc
atagaattccgttcaatagacgaaacgacggccggaatggcatttgacggaatcaatttc
atgggacaacagttgaaagttcgacgtccaagagactatcaaccatctcaaaatacgttt
gatatgaactctcgtatgcctgtttcaacgattgtcgtcgattcggccaataagatcttt
atcggtggtctgcccaactatttgactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTACCGATTCTGGGATGTTCCGC 96 153 1177 Antisense
TGTTCCGCCGACTGGATTCGAGACA 399 559 1194 Antisense
TATGCAGGCGGCTGGACAGGTTCCA 243 655 1242 Antisense
TGGATCTGTACAGTCTGCAGTGCCC 203 549 1269 Antisense
TGTTGGCCCATCAGTGACTTGTCAA 548 563 1296 Antisense
TCAATCACGTCGTCTCTACGTTGGA 480 633 1317 Antisense
ATGCACCTCTGTGGATTGGCTCAAG 542 43 1396 Antisense
TGGAAATCCGATTCTTCTGTGCCAA 655 547 1425 Antisense
TGAACTCTCGTATGCCTGTTTCAAC 155 573 1601 Antisense
CAACGATTGTCGTCGATTCGGCCAA 351 187 1622 Antisense
GTGGTCTGCCCAACTATTTGACTGA 226 489 1661 Antisense
Sequence Source Affymetrix Proprietary Database