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[177030_at]

Description Y55D5A.G /REP_DB=WormBase Gene ID /WP=CE22518 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23456.1
Cluster 6grp_total > 71      4grp_total > 51      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 1.5
(-3)
A 		2.1
(-2.7)
A 		13.4
(3)
A 		1.4
(-3)
A 		12
B 16.2
(3)
A 		12.8
(1.6)
A 		2
(-2.9)
A 		1.8
(-3)
A 		14
C 3.2
(-2.8)
A 		26.5
(3)
P 		10.3
(-1)
A 		2.3
(-3)
A 		24
avr 7
(-0.4) 		13.8
(3) 		8.6
(0.4) 		1.8
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.2
(-3)
A 		9.1
(0.6)
A 		13.6
(3)
A 		12.2
(2.3)
A 		2.9
(-2.6)
A 		6.2
(-0.9)
A 		11
B 1.4
(-3)
A 		1.6
(-3)
A 		11.8
(-0.6)
A 		27.5
(3)
A 		6.2
(-1.9)
A 		1.9
(-2.9)
A 		26
C 4.8
(-2.1)
A 		7.3
(-1.2)
A 		14.9
(1.8)
A 		17.9
(3)
A 		14.3
(1.6)
A 		2.6
(-3)
A 		15
avr 2.8
(-3) 		6
(-1.8) 		13.4
(0.9) 		19.2
(3) 		7.8
(-1.2) 		3.6
(-2.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-2.5)
A 		0.4
(-2.6)
A 		3.5
(3)
A 		0.2
(-3)
A 		3
B 5.2
(3)
A 		3.2
(0.5)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		5
C 1
(-2.5)
A 		7.6
(3)
P 		3.6
(-0.3)
A 		0.4
(-3)
A 		7
avr 2.2
(0.4) 		3.7
(3) 		2.5
(0.9) 		0.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		3.2
(3)
A 		3
(2.6)
A 		3.1
(2.8)
A 		0.9
(-1.9)
A 		1.5
(-0.6)
A 		3
B 0.5
(-3)
A 		0.5
(-3)
A 		2.9
(-0.9)
A 		7.3
(3)
A 		2.5
(-1.2)
A 		0.7
(-2.8)
A 		7
C 1.8
(-1.5)
A 		2.2
(-0.9)
A 		3.8
(1.7)
A 		3.6
(1.4)
A 		4.6
(3)
A 		0.9
(-3)
A 		4
avr 0.9
(-3) 		2
(-1.3) 		3.2
(0.6) 		4.7
(3) 		2.7
(-0.2) 		1
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18917
Sequence Type Exemplar sequence
Representative Public ID Y55D5A.G NCBI
Target Description Y55D5A.G /REP_DB=WormBase Gene ID /WP=CE22518 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23456.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065245 NCBI Caenorhabditis elegans Y55D5A.2 (Y55D5A.2) mRNA, complete cds. 11/11 None
Y55D5A.2 ENSEMBL cdna:known chromosome:CEL140:III:2968956:2969867:1 gene:Y55D5A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2968955-2969867(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55D5A.2
Entrez Gene 190303 Entrez gene
SwissProt Q968Z1 EMBL-EBI
WormBase CE22518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29950 Hypothetical protein Y55D5A.2 [Caenorhabditis elegans] ref|NP_497646.1| Y55D5A.2 [Caenorhabditis elegans] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:177030_AT
ggcattccagtcgctgatttttcatctcttttacttcaggaatttctccaataacctcaa
taggtttaaattcatcagtacaaatacgatatttctgcaagacttccgtaaagttcattc
ttgtagccattttatacgtttcataaatttctttttcagatctccagccgatgcgatccg
tgccaaacgtgatgtttccaccagtgaagatgaggttagcggagattcatctgcagaatt
ttccgacgagaaggtgaagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTCCAGTCGCTGATTTTTCAT 417 537 18 Antisense
GATTTTTCATCTCTTTTACTTCAGG 332 429 33 Antisense
CTCTTTTACTTCAGGAATTTCTCCA 393 227 43 Antisense
GAATTTCTCCAATAACCTCAATAGG 307 325 57 Antisense
ATACGATATTTCTGCAAGACTTCCG 656 21 101 Antisense
GCAAGACTTCCGTAAAGTTCATTCT 211 319 114 Antisense
CGTAAAGTTCATTCTTGTAGCCATT 312 247 124 Antisense
TTGTAGCCATTTTATACGTTTCATA 634 707 138 Antisense
AAATTTCTTTTTCAGATCTCCAGCC 439 115 162 Antisense
GATTCATCTGCAGAATTTTCCGACG 423 431 241 Antisense
ATTTTCCGACGAGAAGGTGAAGCGT 99 1 255 Antisense
Sequence Source Affymetrix Proprietary Database