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[177029_at]

Description Y92C3B.C /REP_DB=WormBase Gene ID /WP=CE25627 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60886.1
Cluster 6grp_high1_10_10 > 88      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_total > 88      4grp_total > 17      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 103.7
(-3)
P 		169.1
(-0.6)
P 		145.8
(-1.5)
P 		269.9
(3)
P 		166
B 114
(-3)
P 		210.8
(1.4)
P 		193.3
(0.6)
P 		246
(3)
P 		132
C 152.7
(-3)
P 		181
(-2.2)
P 		159.5
(-2.8)
P 		363.6
(3)
P 		211
avr 123.5
(-3) 		187
(-0.8) 		166.2
(-1.5) 		293.2
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 699
1 2 3 4 5 6 range
A 127
(-2.9)
A 		121.3
(-3)
P 		246.6
(-1)
P 		199.1
(-1.8)
P 		323
(0.2)
P 		496.4
(3)
P 		375
B 104
(-3)
P 		175.7
(-2.4)
P 		161.5
(-2.5)
P 		188.9
(-2.3)
P 		458.4
(0)
P 		803.3
(3)
P 		699
C 151.1
(-2.7)
P 		250.8
(-1.8)
P 		118.9
(-3)
P 		194.2
(-2.3)
P 		443.3
(-0)
P 		772.6
(3)
P 		654
avr 127.4
(-3) 		182.6
(-2.4) 		175.7
(-2.5) 		194.1
(-2.3) 		408.2
(-0) 		690.8
(3) 		563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 37.8
(-0.6)
P 		36.7
(-3)
P 		38.1
(0)
P 		39.5
(3)
P 		3
B 36.4
(-3)
P 		52.1
(2.9)
P 		44.8
(0.1)
P 		52.4
(3)
P 		16
C 50.6
(-3)
P 		52
(-2.2)
P 		55.6
(-0.2)
P 		61.3
(3)
P 		11
avr 41.6
(-3) 		46.9
(0.3) 		46.2
(-0.1) 		51.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 23.4
(-3)
A 		43.2
(-1.8)
P 		53.7
(-1.1)
P 		50.5
(-1.3)
P 		97.5
(1.6)
P 		120.8
(3)
P 		97
B 36.2
(-3)
P 		58.5
(-2.5)
P 		39.2
(-2.9)
P 		50
(-2.7)
P 		186.3
(0.4)
P 		299.6
(3)
P 		263
C 56
(-2.3)
P 		76.5
(-1.8)
P 		30.3
(-3)
P 		39.1
(-2.8)
P 		143.4
(-0)
P 		258.6
(3)
P 		228
avr 38.5
(-3) 		59.4
(-2.3) 		41.1
(-2.9) 		46.5
(-2.7) 		142.4
(0.3) 		226.3
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19062
Sequence Type Exemplar sequence
Representative Public ID Y92C3B.C NCBI
Target Description Y92C3B.C /REP_DB=WormBase Gene ID /WP=CE25627 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60886.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064929(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064929 NCBI Caenorhabditis elegans KNL (kinetochore null) Binding Protein family member (kbp-4) (kbp-4) mRNA, complete cds. 9/11 None
GENEFINDER00000007832 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1080671:1081246:1 9/11 None
SNAP00000007830 ENSEMBL cdna:SNAP chromosome:CEL140:III:1080896:1081246:1 9/11 None
Y92C3B.1 ENSEMBL cdna:known chromosome:CEL140:III:1080894:1081290:1 gene:Y92C3B.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1080740-1081246(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol kbp-4
Ensembl Y92C3B.1
Entrez Gene 175273 Entrez gene
SwissProt Q9N2X3 EMBL-EBI
WormBase CE34437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29987 Knl (kinetochore null) binding protein protein 4 [Caenorhabditis elegans] ref|NP_497330.2| KNL (kinetochore null) Binding Protein family member (kbp-4) [Caenorhabditis elegans] 5.0E-47
blast AAK29987 Knl (kinetochore null) binding protein protein 4 [Caenorhabditis elegans] ref|NP_497330.2| KNL (kinetochore null) Binding Protein family member (kbp-4) [Caenorhabditis elegans] 7.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007832 1 33-55
Sequence
Target Sequence 
>C. ELEGANS:177029_AT
atgccaagtgcctgtcgtggtgagacccgatggcgcgaaaatggatttcaatcaaaaaaa
atgcaaaaatcaatcgacgacatgatcaacgaagttctcgcggtaaaagtcgaaaaactg
ccgaaaacccaagatttttcggatctccaagaagtttgcgcctccaaactgcagataatt
aacaaggaaatggacgaggccgatcggaagctggaggagacgctcgagaagcgaaaattg
gtggaaaaacaactcgaagacctccaggagcagtataaagtcaaggaattcgcgttttct
cttcaaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAAGTGCCTGTCGTGGTGAGA 201 41 13 Antisense
TGGTGAGACCCGATGGCGCGAAAAT 36 551 30 Antisense
AATCAATCGACGACATGATCAACGA 131 171 80 Antisense
TGATCAACGAAGTTCTCGCGGTAAA 448 563 95 Antisense
ACCCAAGATTTTTCGGATCTCCAAG 111 91 139 Antisense
GGATCTCCAAGAAGTTTGCGCCTCC 116 513 153 Antisense
TTTGCGCCTCCAAACTGCAGATAAT 366 669 167 Antisense
GGACGAGGCCGATCGGAAGCTGGAG 690 523 204 Antisense
GGAAGCTGGAGGAGACGCTCGAGAA 256 531 218 Antisense
AACAACTCGAAGACCTCCAGGAGCA 546 133 260 Antisense
GAATTCGCGTTTTCTCTTCAAAAAG 673 323 298 Antisense
Sequence Source Affymetrix Proprietary Database