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[177027_at]

Description Y48G1A.H /REP_DB=WormBase Gene ID /WP=CE22164 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60686.1
Cluster 6grp_total > 90      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 55.1
(3)
A 		7.7
(-3)
A 		54.8
(3)
A 		25.4
(-0.8)
A 		47
B 22.5
(-1.2)
A 		17
(-3)
A 		33.3
(2.3)
A 		35.3
(3)
A 		18
C 13.8
(0.1)
A 		10.8
(-1.3)
A 		19.7
(3)
A 		7.3
(-3)
A 		12
avr 30.5
(1.7) 		11.8
(-3) 		35.9
(3) 		22.7
(-0.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 23.2
(-1.9)
A 		52.8
(2.4)
A 		15.5
(-3)
A 		56.6
(3)
A 		20.4
(-2.3)
A 		38.6
(0.4)
A 		41
B 9.5
(-2.8)
A 		7.7
(-3)
A 		36.7
(0.2)
A 		62.4
(3)
A 		45.6
(1.2)
A 		9.4
(-2.8)
A 		55
C 44.1
(1.7)
A 		5.8
(-3)
A 		17.4
(-1.6)
A 		31.3
(0.1)
A 		54.9
(3)
A 		12.8
(-2.1)
A 		49
avr 25.6
(-1.9) 		22.1
(-2.6) 		23.2
(-2.4) 		50.1
(3) 		40.3
(1) 		20.3
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.1
(3)
A 		1.7
(-3)
A 		14.3
(1.1)
A 		3.7
(-2.3)
A 		18
B 7.2
(2.1)
A 		4.2
(-3)
A 		7.7
(3)
A 		7.5
(2.7)
A 		4
C 4.6
(0.6)
A 		3.1
(-1)
A 		6.9
(3)
A 		1.2
(-3)
A 		6
avr 10.6
(3) 		3
(-3) 		9.6
(2.2) 		4.1
(-2.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.3
(-2.6)
A 		18.8
(3)
A 		3.4
(-3)
A 		14.4
(1.3)
A 		6.2
(-1.9)
A 		9.4
(-0.7)
A 		15
B 3.3
(-2.7)
A 		2.6
(-3)
A 		8.9
(-0.6)
A 		16.5
(2.2)
A 		18.5
(3)
A 		3.5
(-2.7)
A 		16
C 16.3
(2.4)
A 		1.8
(-3)
A 		4.4
(-2)
A 		6.3
(-1.3)
A 		17.8
(3)
A 		4.3
(-2.1)
A 		16
avr 8
(-1.3) 		7.7
(-1.5) 		5.6
(-3) 		12.4
(1.7) 		14.2
(3) 		5.7
(-2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18861
Sequence Type Exemplar sequence
Representative Public ID Y48G1A.H NCBI
Target Description Y48G1A.H /REP_DB=WormBase Gene ID /WP=CE22164 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60686.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058321 NCBI Caenorhabditis elegans Y48G1A.1 (Y48G1A.1) mRNA, complete cds. 11/11 None
SNAP00000006802 ENSEMBL cdna:SNAP chromosome:CEL140:I:348538:357080:1 11/11 None
GENEFINDER00000006805 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:348538:357109:1 11/11 None
Y48G1A.1 ENSEMBL cdna:known chromosome:CEL140:I:348538:357080:1 gene:Y48G1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:348537-357080(+) 99.84 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1A.1
Entrez Gene 190030 Entrez gene
SwissProt Q9N3Q5 EMBL-EBI
WormBase CE22164 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60686 Hypothetical protein Y48G1A.1 [Caenorhabditis elegans] ref|NP_490722.1| Y48G1A.1 [Caenorhabditis elegans] 0.0
blast CAE61277 Hypothetical protein CBG05096 [Caenorhabditis briggsae] 0.0
blast CAE61277 Hypothetical protein CBG05096 [Caenorhabditis briggsae] 1.0E-139
Sequence
Target Sequence 
>C. ELEGANS:177027_AT
tcgatgacgtcatcgccgattccaatcggaggcggccgctcgaaacccgaaagtttctca
aaatcaatcaatagtcctgtcattcaatcgccactctctccctcaccaatcaaaggaatg
ccaaagtcccgccacgatagtatttccaattcactggacgattttcctgaaatgagcatt
tcaccgtccccctcgacaccgaaatcctcttccggtggcggtcgcttcgcaccaaaagga
actcgatttaaaaaggatttcgaaattctcgtgaaaccttcccagtcaccacagaatccg
tggaaaatgggcggagcttccgcgtcgattcgcgaagaaattgatccgcaggagatccga
ttcgacgaagttgtgaagaaggaacagaaattgcagactaatatacgaaccggattcaaa
aaagtgcagcttctaccacacgtggagacggaagagctcgccggagctcaaattttggag
gtttttcgacgagaacttcacgatgaggcgctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATGACGTCATCGCCGATTCCAA 323 603 1933 Antisense
TCAATAGTCCTGTCATTCAATCGCC 638 633 2000 Antisense
CAAAGGAATGCCAAAGTCCCGCCAC 341 191 2043 Antisense
TCCCGCCACGATAGTATTTCCAATT 350 597 2059 Antisense
GACACCGAAATCCTCTTCCGGTGGC 552 365 2127 Antisense
GGTCGCTTCGCACCAAAAGGAACTC 432 501 2152 Antisense
CGAAATTCTCGTGAAACCTTCCCAG 352 251 2193 Antisense
AGCTTCCGCGTCGATTCGCGAAGAA 15 79 2247 Antisense
ATCCGCAGGAGATCCGATTCGACGA 118 39 2276 Antisense
AAAAAGTGCAGCTTCTACCACACGT 674 129 2351 Antisense
GAGAACTTCACGATGAGGCGCTCAT 181 393 2423 Antisense
Sequence Source Affymetrix Proprietary Database