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[177026_at]

Description Y55D5A.J /REP_DB=WormBase Gene ID /WP=CE22514 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23459.1
Cluster 6grp_total > 0      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 13.4
(0.8)
A 		5.8
(-1.7)
A 		2
(-3)
A 		20.2
(3)
A 		18
B 26
(3)
A 		3.7
(-2.9)
A 		3.3
(-3)
A 		22.4
(2)
A 		23
C 9.1
(-1.9)
A 		2.8
(-2.8)
A 		1.1
(-3)
A 		45.3
(3)
A 		44
avr 16.2
(0.1) 		4.1
(-2.6) 		2.1
(-3) 		29.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.8
(-3)
A 		4.3
(-2.6)
A 		11.9
(-0.7)
A 		26.5
(3)
A 		24.6
(2.5)
A 		4
(-2.7)
A 		24
B 1.4
(-3)
A 		17.6
(3)
M 		3.4
(-2.3)
A 		2.2
(-2.7)
A 		2.5
(-2.6)
A 		11
(0.6)
A 		16
C 11.7
(1.7)
A 		14.2
(3)
A 		3.1
(-2.9)
A 		5.6
(-1.6)
A 		2.9
(-3)
A 		9.2
(0.3)
A 		11
avr 5.3
(-3) 		12
(3) 		6.1
(-2.3) 		11.4
(2.5) 		10
(1.2) 		8.1
(-0.5) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.9
(3)
A 		1.3
(-1.9)
A 		0.5
(-3)
A 		3
(0.4)
A 		4
B 8.3
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		4.8
(0.2)
A 		8
C 3
(-0.8)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		7.6
(3)
A 		7
avr 5.4
(3) 		1
(-2.5) 		0.6
(-3) 		5.1
(2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.5
(-2.1)
A 		2.6
(-1.2)
A 		6.7
(2.4)
A 		7.4
(3)
A 		1
(-2.6)
A 		7
B 0.5
(-3)
A 		5.9
(3)
M 		0.8
(-2.7)
A 		0.6
(-2.9)
A 		1
(-2.4)
A 		4.1
(1)
A 		5
C 4.3
(3)
A 		4.3
(3)
A 		0.8
(-3)
A 		1.1
(-2.5)
A 		0.9
(-2.8)
A 		3.1
(0.9)
A 		4
avr 1.8
(-2) 		3.9
(3) 		1.4
(-3) 		2.8
(0.4) 		3.1
(1.1) 		2.7
(0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18918
Sequence Type Exemplar sequence
Representative Public ID Y55D5A.J NCBI
Target Description Y55D5A.J /REP_DB=WormBase Gene ID /WP=CE22514 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23459.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000025106 ENSEMBL cdna:SNAP chromosome:CEL140:III:3052877:3057540:1 11/11 None
GENEFINDER00000025127 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3052906:3057540:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3051807-3054519(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39870 Hypothetical protein H06I04.5 [Caenorhabditis elegans] ref|NP_497652.2| H06I04.5 [Caenorhabditis elegans] 0.0
blast AAB52891 Hypothetical protein T20B6.2 [Caenorhabditis elegans] ref|NP_497635.1| T20B6.2 [Caenorhabditis elegans] 1.0E-128
blast AAB52891 Hypothetical protein T20B6.2 [Caenorhabditis elegans] ref|NP_497635.1| T20B6.2 [Caenorhabditis elegans] 1.0E-110
blast AAK18987 Hypothetical protein W03F11.4 [Caenorhabditis elegans] ref|NP_490945.1| W03F11.4 [Caenorhabditis elegans] 4.0E-94
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-30
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-56
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.5E-26
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000025106 1 767-789
GENEFINDER00000025127 1 658-680
Sequence
Target Sequence 
>C. ELEGANS:177026_AT
gcatctatccttttcttgcaagcggatacggcttctcttccagaagaaactgatgtttct
ggtaccattgaccttctgaaaaactgcgatatagatcgtcgttcggcatcaattcatgtt
gaacaatttagttctaccactgcggctatcaaaaacttgaatgaagacatttccaaagtt
ctgacatatgatttgcggttatttgactatgtcgaaaaacttaaagatctcagttctttg
aaaaacatcgttgagacaaccactgatgatgtacaaggaaaagctgccattgaaaaaatg
aaagctaatccaaagtttgaggaggtaaagactatattagttacttttcaacaagatttg
ggcagtctcagacagttaattgacggaattcattcattggctggcaaaatcaatttttcc
ctgattgatgaatattataaggagattaatgaacctctttacgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTATCCTTTTCTTGCAAGCGG 526 309 979 Antisense
TTGCAAGCGGATACGGCTTCTCTTC 356 703 994 Antisense
GTTTCTGGTACCATTGACCTTCTGA 244 447 1033 Antisense
ATCGTCGTTCGGCATCAATTCATGT 517 35 1073 Antisense
ACAATTTAGTTCTACCACTGCGGCT 171 115 1101 Antisense
ACCACTGCGGCTATCAAAAACTTGA 516 85 1114 Antisense
GAAGACATTTCCAAAGTTCTGACAT 15 341 1141 Antisense
AGTTCTGACATATGATTTGCGGTTA 166 65 1155 Antisense
CAAGATTTGGGCAGTCTCAGACAGT 309 155 1330 Antisense
TGACGGAATTCATTCATTGGCTGGC 679 567 1359 Antisense
GAGATTAATGAACCTCTTTACGAAA 223 397 1420 Antisense
Sequence Source Affymetrix Proprietary Database