[Home] | [Total List]

[177025_at]

Description Y48G1A.A /REP_DB=WormBase Gene ID /WP=CE25316 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60679.1
Cluster 6grp_total > 88      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 38
(-3)
A 		107.9
(2)
A 		116.4
(2.6)
A 		122.7
(3)
A 		85
B 79.4
(-2.7)
A 		127.3
(3)
A 		121.2
(2.3)
P 		76.9
(-3)
A 		50
C 100
(-3)
A 		115.8
(-2.1)
A 		130.7
(-1.3)
P 		205.4
(3)
P 		105
avr 72.5
(-3) 		117
(1.3) 		122.8
(1.8) 		135
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 89.5
(-2.2)
A 		79.6
(-2.4)
A 		55.1
(-3)
A 		105.3
(-1.8)
A 		122.3
(-1.4)
P 		309.7
(3)
P 		255
B 83.4
(-2.3)
A 		95.1
(-1.6)
A 		110.3
(-0.7)
A 		71.8
(-3)
P 		154.4
(1.9)
P 		173.9
(3)
P 		102
C 86.8
(-1.4)
P 		84.4
(-1.5)
P 		104.4
(-0.8)
A 		42.9
(-3)
A 		181.7
(2.1)
P 		207.1
(3)
P 		164
avr 86.6
(-2.5) 		86.4
(-2.5) 		89.9
(-2.4) 		73.3
(-3) 		152.8
(0) 		230.2
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 13.8
(-3)
A 		23.4
(0.5)
A 		30.4
(3)
A 		18
(-1.5)
A 		17
B 25.3
(0.6)
A 		31.4
(3)
A 		28.1
(1.7)
P 		16.4
(-3)
A 		15
C 33.1
(-3)
A 		33.3
(-2.9)
A 		45.5
(3)
P 		34.6
(-2.3)
P 		12
avr 24.1
(-2.4) 		29.4
(0.3) 		34.7
(3) 		23
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 16.5
(-2.6)
A 		28.3
(-1.5)
A 		12
(-3)
A 		26.7
(-1.6)
A 		36.9
(-0.6)
P 		75.4
(3)
P 		63
B 29
(-1.7)
A 		31.6
(-1.3)
A 		26.8
(-2)
A 		19
(-3)
P 		62.7
(2.7)
P 		64.8
(3)
P 		46
C 32.2
(-0.7)
P 		25.7
(-1.3)
P 		26.6
(-1.2)
A 		8.6
(-3)
A 		58.8
(2)
P 		69.3
(3)
P 		61
avr 25.9
(-2.1) 		28.5
(-1.8) 		21.8
(-2.6) 		18.1
(-3) 		52.8
(1) 		69.8
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18852
Sequence Type Exemplar sequence
Representative Public ID Y48G1A.A NCBI
Target Description Y48G1A.A /REP_DB=WormBase Gene ID /WP=CE25316 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60679.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058319 NCBI Caenorhabditis elegans Y48G1A.6 (Y48G1A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000006806 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:343544:347116:-1 11/11 None
Y48G1A.6 ENSEMBL cdna:known chromosome:CEL140:I:343118:348367:-1 gene:Y48G1A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:343892-347116(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1A.6
Entrez Gene 171624 Entrez gene
SwissProt Q9N3Q7 EMBL-EBI
WormBase CE27002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60679 Hypothetical protein Y48G1A.6 [Caenorhabditis elegans] ref|NP_490720.1| Y48G1A.6 [Caenorhabditis elegans] 0.0
blast CAA95838 Hypothetical protein R06C7.7 [Caenorhabditis elegans] ref|NP_492050.3| abnormal cell LINeage family member (lin-61) [Caenorhabditis elegans] 1.0E-93
blast CAA95838 Hypothetical protein R06C7.7 [Caenorhabditis elegans] ref|NP_492050.3| abnormal cell LINeage family member (lin-61) [Caenorhabditis elegans] 2.0E-87
blast CAE68058 Hypothetical protein CBG13678 [Caenorhabditis briggsae] 2.0E-87
blast CAE63135 Hypothetical protein CBG07435 [Caenorhabditis briggsae] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR004092 EMBL-EBI Mbt repeat 1.0E-11
Pfam IPR004092 EMBL-EBI Mbt repeat 8.0E-14
Pfam IPR004092 EMBL-EBI Mbt repeat 1.0E-11
Pfam IPR004092 EMBL-EBI Mbt repeat 8.0E-14
Sequence
Target Sequence 
>C. ELEGANS:177025_AT
tcttcctgtttccagtcggatttgcaatgattaatggattacggactaaggctacggaag
gttatttggaacattccagacggatcgcagaaggttctggaactgaaaaattaaatttat
taaaagtcggccaaaaatttgaacttttggatccactcagcgacctacgccagtcatttt
gcgtcgcaacaattcgaaaaatatgcaaaacgcctggatttttaattatttcacctgatg
agacagaatcggacgatgaatccttcccaattcatattgataatcattttatgcatcctg
tcggctatgctgagaagttcggaatcaagctggatcggcttgcaggcactgagcccggga
aattcaagtgggaagggtatttgaaggagaagcaggcggaaaaaattcctgatgagatgc
ttaggccgttgccgagcaaggagagaaggcacatgtttgagttcggtcgtgtccttgaag
ccgtcggccaaaacgagacctactggatatcaccggcctccgtcgaagaagtacacggta
gaacggtgctcatcgagtttcaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCTGTTTCCAGTCGGATTTGC 87 619 947 Antisense
TGAACTTTTGGATCCACTCAGCGAC 346 573 1086 Antisense
GACCTACGCCAGTCATTTTGCGTCG 235 383 1108 Antisense
ATCGGACGATGAATCCTTCCCAATT 635 33 1194 Antisense
ATCATTTTATGCATCCTGTCGGCTA 335 31 1229 Antisense
TGGATCGGCTTGCAGGCACTGAGCC 79 551 1277 Antisense
TGAGATGCTTAGGCCGTTGCCGAGC 561 567 1359 Antisense
CATGTTTGAGTTCGGTCGTGTCCTT 536 209 1398 Antisense
GTGTCCTTGAAGCCGTCGGCCAAAA 315 485 1415 Antisense
ACGAGACCTACTGGATATCACCGGC 377 93 1439 Antisense
GAACGGTGCTCATCGAGTTTCAGGG 45 349 1487 Antisense
Sequence Source Affymetrix Proprietary Database