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[177022_at]

Description Y55D5A.H /REP_DB=WormBase Gene ID /WP=CE22519 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23457.1
Cluster 6grp_total > 03      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 184.6
(3)
A 		179.1
(2.5)
A 		162.7
(1.1)
A 		117.1
(-3)
A 		68
B 104.2
(-3)
A 		128
(-1)
M 		174
(3)
A 		126.9
(-1)
A 		70
C 172
(2)
A 		181.6
(3)
A 		136.7
(-1.6)
P 		123
(-3)
A 		59
avr 153.6
(1.6) 		162.9
(3) 		157.8
(2.2) 		122.3
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 176.5
(3)
P 		153.4
(1.6)
A 		123.6
(-0.2)
P 		115.5
(-0.7)
P 		103.8
(-1.5)
A 		78.6
(-3)
A 		98
B 146.3
(2)
P 		165
(3)
A 		135.3
(1.5)
A 		94
(-0.6)
A 		122.9
(0.9)
A 		47.4
(-3)
A 		118
C 173.3
(3)
M 		123
(0.7)
A 		146.7
(1.8)
A 		95.9
(-0.5)
A 		146.2
(1.8)
A 		41.9
(-3)
A 		131
avr 165.4
(3) 		147.1
(2) 		135.2
(1.3) 		101.8
(-0.5) 		124.3
(0.7) 		56
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 67.2
(3)
A 		38.9
(-0.4)
A 		42.5
(0)
A 		17.1
(-3)
A 		50
B 33.2
(-0.2)
A 		31.6
(-0.9)
M 		40.3
(3)
A 		27
(-3)
A 		13
C 56.9
(3)
A 		52.2
(2.2)
A 		47.7
(1.5)
P 		20.7
(-3)
A 		36
avr 52.4
(3) 		40.9
(0.8) 		43.5
(1.3) 		21.6
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 32.5
(-0.7)
P 		54.6
(3)
A 		26.9
(-1.7)
P 		29.3
(-1.3)
P 		31.3
(-0.9)
A 		19.1
(-3)
A 		36
B 50.9
(2.4)
P 		54.9
(3)
A 		32.8
(-0.6)
A 		24.9
(-1.8)
A 		49.9
(2.2)
A 		17.7
(-3)
A 		37
C 64.2
(3)
M 		37.5
(-0.2)
A 		37.3
(-0.2)
A 		19.3
(-2.4)
A 		47.3
(1)
A 		14
(-3)
A 		50
avr 49.2
(3) 		49
(3) 		32.3
(-0.1) 		24.5
(-1.6) 		42.8
(1.8) 		16.9
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18924
Sequence Type Exemplar sequence
Representative Public ID Y55D5A.H NCBI
Target Description Y55D5A.H /REP_DB=WormBase Gene ID /WP=CE22519 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23457.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027748(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027748 NCBI Caenorhabditis elegans Y55D5A.1a (Y55D5A.1) mRNA, complete cds. 10/11 None
GENEFINDER00000010560 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2982461:2987975:1 10/11 None
Y55D5A.1a ENSEMBL cdna:known chromosome:CEL140:III:2982413:2988068:1 gene:Y55D5A.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175408 2 1 NM_001027748 177022_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2983510-2986031(+) 97.07 100.0
Public Domain and Genome References
Ensembl Y55D5A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39621 Hypothetical protein Y55D5A.1a [Caenorhabditis elegans] ref|NP_001022919.1| Y55D5A.1a [Caenorhabditis elegans] 1.0E-135
blast CAE57501 Hypothetical protein CBG00474 [Caenorhabditis briggsae] 9.0E-95
blast AAP40511 Hypothetical protein Y55D5A.1b [Caenorhabditis elegans] ref|NP_001022920.1| Y55D5A.1b [Caenorhabditis elegans] 1.0E-90
Sequence
Target Sequence 
>C. ELEGANS:177022_AT
aaactttagtcgacattcctctcgccttcataatctccgtggaagtcatggcaaccgaaa
gcagcgacaggctccgcccactttgcagccccagcaggcaggtggagctgccggagcacc
atcagtctcatttgagagaggagctggacaaatgaaccctttaacttctgggcgtcgtca
ctcttttgaagattttgctaatttagactcggttatcgcagaaatgctccaaaatattaa
gaatatggctcaagttttgcagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTTAGTCGACATTCCTCTCGC 568 125 111 Antisense
CTCGCCTTCATAATCTCCGTGGAAG 701 233 131 Antisense
TCTCCGTGGAAGTCATGGCAACCGA 308 609 144 Antisense
AACCGAAAGCAGCGACAGGCTCCGC 611 145 163 Antisense
CAGCCCCAGCAGGCAGGTGGAGCTG 85 203 196 Antisense
CGGAGCACCATCAGTCTCATTTGAG 466 243 222 Antisense
GGAGCTGGACAAATGAACCCTTTAA 239 521 250 Antisense
TGAACCCTTTAACTTCTGGGCGTCG 557 457 263 Antisense
GGCGTCGTCACTCTTTTGAAGATTT 230 537 281 Antisense
AGACTCGGTTATCGCAGAAATGCTC 527 71 315 Antisense
GAATATGGCTCAAGTTTTGCAGAAT 65 327 351 Antisense
Sequence Source Affymetrix Proprietary Database