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[177021_at]

Description Y48G1A.F /REP_DB=WormBase Gene ID /WP=CE25317 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60684.1
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 74      6grp_total > 38      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 520
1 2 3 4 range
A 825.1
(3)
P 		542.4
(-2.3)
P 		506.6
(-3)
P 		530.1
(-2.6)
P 		319
B 671.6
(3)
P 		442.7
(-3)
P 		594.5
(1)
P 		582.6
(0.7)
P 		229
C 963
(3)
P 		531.1
(-3)
P 		713.8
(-0.5)
P 		618.5
(-1.8)
P 		432
avr 819.9
(3) 		505.4
(-3) 		605
(-1.1) 		577.1
(-1.6) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 484
1 2 3 4 5 6 range
A 995.6
(3)
P 		836.2
(0.9)
P 		623.4
(-2)
P 		675.8
(-1.3)
P 		638.9
(-1.8)
P 		550.6
(-3)
P 		445
B 838.8
(3)
P 		655.9
(-1.4)
P 		590.3
(-3)
P 		761.1
(1.1)
P 		680.7
(-0.8)
P 		702
(-0.3)
P 		249
C 680.4
(-2)
P 		649.5
(-2.4)
P 		608
(-3)
P 		707.9
(-1.6)
P 		721.9
(-1.4)
P 		1034.4
(3)
P 		426
avr 838.3
(3) 		713.9
(-0.2) 		607.2
(-3) 		714.9
(-0.2) 		680.5
(-1.1) 		762.3
(1) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 300.4
(3)
P 		117.7
(-1.9)
P 		132.4
(-1.5)
P 		77.6
(-3)
P 		223
B 214.2
(3)
P 		109.3
(-3)
P 		137.8
(-1.4)
P 		124.2
(-2.1)
P 		105
C 318.8
(3)
P 		152.7
(-1.6)
P 		248.8
(1)
P 		104.3
(-3)
P 		215
avr 277.8
(3) 		126.6
(-2.2) 		173
(-0.6) 		102
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 183.5
(-1.2)
P 		297.4
(3)
P 		135.8
(-2.9)
P 		171.4
(-1.6)
P 		192.8
(-0.8)
P 		134
(-3)
P 		163
B 291.9
(3)
P 		218.3
(0)
P 		143.3
(-3)
P 		201.6
(-0.6)
P 		276.5
(2.4)
P 		261.8
(1.8)
P 		149
C 252.2
(0.2)
P 		198.2
(-1.4)
P 		154.7
(-2.6)
P 		142.4
(-3)
P 		233.6
(-0.3)
P 		346.3
(3)
P 		204
avr 242.5
(2.7) 		238
(2.5) 		144.6
(-3) 		171.8
(-1.4) 		234.3
(2.2) 		247.4
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18848
Sequence Type Exemplar sequence
Representative Public ID Y48G1A.F NCBI
Target Description Y48G1A.F /REP_DB=WormBase Gene ID /WP=CE25317 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60684.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058318 NCBI Caenorhabditis elegans Y48G1A.3 (Y48G1A.3) mRNA, complete cds. 11/11 None
SNAP00000006799 ENSEMBL cdna:SNAP chromosome:CEL140:I:332614:337377:1 10/11 None
GENEFINDER00000006808 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:332614:337721:1 11/11 None
Y48G1A.3 ENSEMBL cdna:known chromosome:CEL140:I:332614:337816:1 gene:Y48G1A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:332613-337721(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1A.3
Entrez Gene 171623 Entrez gene
SwissProt Q9N3Q8 EMBL-EBI
WormBase CE26999 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597502_S_AT similar to ankyrin repeat and MYND domain containing 2 cfa
CANINE:1583338_AT similar to ankyrin repeat and MYND domain containing 2 cfa
CANINE_2:CFA.1513.1.A1_AT similar to ankyrin repeat and MYND domain containing 2 cfa
CANINE_2:CFA.18011.1.S1_AT similar to ankyrin repeat and MYND domain containing 2 cfa
CANINE_2:CFA.18011.1.S1_S_AT similar to ankyrin repeat and MYND domain containing 2 cfa
CANINE_2:CFAAFFX.4516.1.S1_AT similar to ankyrin repeat and MYND domain containing 2 cfa
DROSOPHILA_2:1636972_AT dm
DROSGENOME1:154722_AT dm
CHICKEN:GGAAFFX.6827.1.S1_S_AT ankyrin repeat and MYND domain containing 2 gga
HU35KSUBB:RC_N67906_AT ankyrin repeat and MYND domain containing 2 hs
U133_X3P:HS.15144.0.S1_3P_A_AT ankyrin repeat and MYND domain containing 2 hs
HG-U133A_2:212798_S_AT ankyrin repeat and MYND domain containing 2 hs
HG-U133_PLUS_2:212798_S_AT ankyrin repeat and MYND domain containing 2 hs
HG-U133A:212798_S_AT ankyrin repeat and MYND domain containing 2 hs
HG-U95AV2:31852_AT ankyrin repeat and MYND domain containing 2 hs
U133_X3P:HS2.157378.1.A1_3P_S_AT Ankyrin repeat and MYND domain containing 2 hs
HG-U133_PLUS_2:1556542_A_AT Ankyrin repeat and MYND domain containing 2 hs
HG-U95D:83513_AT Ankyrin repeat and MYND domain containing 2 hs
HG-U133_PLUS_2:243577_AT Ankyrin repeat and MYND domain containing 2 hs
HG-U133B:243577_AT Ankyrin repeat and MYND domain containing 2 hs
HG-U95D:80124_AT Ankyrin repeat and MYND domain containing 2 hs
HU35KSUBD:RC_AA179225_AT Ankyrin repeat and MYND domain containing 2 hs
HU35KSUBD:RC_AA608863_AT Ankyrin repeat and MYND domain containing 2 hs
U133_X3P:HS.146144.0.A1_3P_AT Ankyrin repeat and MYND domain containing 2 hs
MOE430A:1425936_A_AT ankyrin repeat and MYND domain containing 2 mm
MOUSE430A_2:1425936_A_AT ankyrin repeat and MYND domain containing 2 mm
MOUSE430_2:1425936_A_AT ankyrin repeat and MYND domain containing 2 mm
MG-U74BV2:108027_AT ankyrin repeat and MYND domain containing 2 mm
MOE430A:1451724_AT ankyrin repeat and MYND domain containing 2 mm
MOUSE430A_2:1451724_AT ankyrin repeat and MYND domain containing 2 mm
MOUSE430_2:1451724_AT ankyrin repeat and MYND domain containing 2 mm
MOE430A:1425482_S_AT ankyrin repeat and MYND domain containing 2 mm
MOUSE430A_2:1425482_S_AT ankyrin repeat and MYND domain containing 2 mm
MOUSE430_2:1425482_S_AT ankyrin repeat and MYND domain containing 2 mm
MU19KSUBB:TC31614_AT Ankyrin repeat and MYND domain containing 2 (Ankmy2), transcript variant 1, mRNA mm
RG-U34B:RC_AA998577_AT Guanine nucleotide binding protein, alpha 14 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60684 Hypothetical protein Y48G1A.3 [Caenorhabditis elegans] ref|NP_490719.1| Y48G1A.3 [Caenorhabditis elegans] 0.0
blast CAE74349 Hypothetical protein CBG22067 [Caenorhabditis briggsae] 3.0E-90
blast CAE74347 Hypothetical protein CBG22065 [Caenorhabditis briggsae] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.028
Pfam IPR002110 EMBL-EBI Ankyrin 6.4E-5
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 8.2E-12
Pfam IPR002110 EMBL-EBI Ankyrin 22.0
Pfam IPR002110 EMBL-EBI Ankyrin 6.4E-5
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 8.2E-12
Sequence
Target Sequence 
>C. ELEGANS:177021_AT
aaagatcctctacgtcatcgatcgtgtcttcgagaaacagcttcgatgtaaggaaagcaa
tgaaataatgtcgctcaagctttggctaattctattttcaatgcgtgaaacctcgaaatt
cgtggagtcgaacaaggaaaagtcgccagaagaagcgtctctacagtacgcaaaactgat
ttccacgtggcaagagggcgatgaaactaggcgagcacttgacgtgatgctgagaaatgc
ggttgcttcgttcccgtataaacattcattacttcatgatactctacaaaaagcactgca
aaaaagtcaaattggtgaacgaccaagtgcctatgaatacattgttcaggcacttttcgg
acaacgaatcgctgcggtctgccagttttgctcggtttgcggacatcctggagccaagaa
acggtgcacacagtgcaaactcgcctactgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGATCCTCTACGTCATCGATCGT 667 121 609 Antisense
AATGTCGCTCAAGCTTTGGCTAATT 283 163 675 Antisense
GTCGCCAGAAGAAGCGTCTCTACAG 536 475 750 Antisense
GCAAAACTGATTTCCACGTGGCAAG 217 319 778 Antisense
GAAACTAGGCGAGCACTTGACGTGA 630 355 811 Antisense
GAGAAATGCGGTTGCTTCGTTCCCG 148 393 840 Antisense
GGTGAACGACCAAGTGCCTATGAAT 459 499 922 Antisense
GTTCAGGCACTTTTCGGACAACGAA 357 443 952 Antisense
GGACAACGAATCGCTGCGGTCTGCC 678 525 967 Antisense
GTTTGCGGACATCCTGGAGCCAAGA 315 451 1003 Antisense
ACAGTGCAAACTCGCCTACTGTTCC 279 107 1038 Antisense
Sequence Source Affymetrix Proprietary Database