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[177020_at]

Description Y34B4A.B /REP_DB=WormBase Gene ID /WP=CE21518 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59637.1
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 62      6grp_total > 50      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 593.6
(3)
P 		483.4
(-0.9)
P 		524.8
(0.6)
P 		424.7
(-3)
P 		169
B 647.6
(3)
P 		509.7
(0.4)
P 		499.2
(0.2)
P 		324.9
(-3)
P 		323
C 630.7
(3)
P 		490.8
(-0.9)
P 		463.3
(-1.7)
P 		416.3
(-3)
P 		214
avr 624
(3) 		494.6
(-0.3) 		495.8
(-0.3) 		388.6
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 478.7
(-1.7)
P 		616.7
(0.5)
P 		602.3
(0.3)
P 		767.3
(3)
P 		401.4
(-3)
P 		405.7
(-2.9)
P 		366
B 441.7
(-2.3)
P 		625.2
(1.1)
P 		486.2
(-1.5)
P 		725.1
(3)
P 		496.7
(-1.3)
P 		405.7
(-3)
P 		319
C 558.3
(-0.1)
P 		643.5
(1)
P 		575.3
(0.1)
P 		810
(3)
P 		395.4
(-2.1)
P 		320.2
(-3)
P 		490
avr 492.9
(-1.2) 		628.5
(0.9) 		554.6
(-0.3) 		767.5
(3) 		431.2
(-2.2) 		377.2
(-3) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 216.1
(3)
P 		104.9
(-1.3)
P 		137.2
(-0.1)
P 		62.2
(-3)
P 		154
B 206.5
(3)
P 		125.9
(-0.5)
P 		115.7
(-1)
P 		69.2
(-3)
P 		137
C 208.8
(3)
P 		141.1
(0.1)
P 		161.5
(1)
P 		70.2
(-3)
P 		139
avr 210.5
(3) 		124
(-0.6) 		138.1
(-0) 		67.2
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 88.2
(-3)
P 		219.3
(3)
P 		131.2
(-1)
P 		194.6
(1.9)
P 		121.1
(-1.5)
P 		98.8
(-2.5)
P 		131
B 153.7
(-0.6)
P 		208.1
(3)
P 		118.1
(-3)
P 		192.1
(1.9)
P 		201.8
(2.6)
P 		151.3
(-0.8)
P 		90
C 207
(3)
P 		196.3
(2.4)
P 		146.4
(-0.6)
P 		162.9
(0.3)
P 		128
(-1.7)
P 		107.2
(-3)
P 		100
avr 149.6
(-0.9) 		207.9
(3) 		131.9
(-2.1) 		183.2
(1.3) 		150.3
(-0.9) 		119.1
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19552
Sequence Type Exemplar sequence
Representative Public ID Y34B4A.B NCBI
Target Description Y34B4A.B /REP_DB=WormBase Gene ID /WP=CE21518 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59637.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076488 NCBI Caenorhabditis elegans Y34B4A.7 (Y34B4A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000022891 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5244354:5246654:1 11/11 None
Y34B4A.7.1 ENSEMBL cdna:known chromosome:CEL140:X:5244302:5246892:1 gene:Y34B4A.7 11/11 None
Y34B4A.7.2 ENSEMBL cdna:known chromosome:CEL140:X:5244327:5246892:1 gene:Y34B4A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022875 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5244354-5246655(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34B4A.7
Entrez Gene 180793 Entrez gene
SwissProt Q9N470 EMBL-EBI
WormBase CE29371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59637 Hypothetical protein Y34B4A.7 [Caenorhabditis elegans] ref|NP_508889.1| Y34B4A.7 [Caenorhabditis elegans] 0.0
blast CAE68716 Hypothetical protein CBG14642 [Caenorhabditis briggsae] 1.0E-143
blast CAE68716 Hypothetical protein CBG14642 [Caenorhabditis briggsae] 1.0E-142
blast XP_797658 PREDICTED: similar to RIKEN cDNA 5630401D24 [Strongylocentrotus purpuratus] 5.0E-19
blast XP_797658 PREDICTED: similar to RIKEN cDNA 5630401D24 [Strongylocentrotus purpuratus] 6.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508889.1 1 30-52
Y34B4A.7.1 1 30-52
Y34B4A.7.2 1 30-52
GENEFINDER00000022891 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:177020_AT
aactggacccggttgttgtcggcattgctcgtaagtggttcaatgtagtcaacgacaata
ctcggagaaccatcaccgctgatggactgaagtttattaaggaagccaagaaaaatggta
ctggagaattgtacgaggtggtttttctggatgcctgtgacaactctaaaatcattccat
gcccatcgaaaattttcagaaatcctgaaactttcagcaccttatcttcaatattgagta
gcactggtgctctcattgtcaatatactaccacaaaatgatgatacagctggcgtgattc
agattgtcgaagacctttcccaacactttggctcttgcattaaagtttccatcactgatg
aagtgaacgttatagcaatctgtacaaaacaagcattcacggacagcacatcgaacgtgg
atttcttgaaacgacgagccaacgccgtgacaatgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGGACCCGGTTGTTGTCGGCAT 95 141 629 Antisense
GTCGGCATTGCTCGTAAGTGGTTCA 22 471 646 Antisense
TACTCGGAGAACCATCACCGCTGAT 18 647 687 Antisense
GTGGTTTTTCTGGATGCCTGTGACA 559 489 766 Antisense
AAATCATTCCATGCCCATCGAAAAT 21 119 797 Antisense
AAACTTTCAGCACCTTATCTTCAAT 321 127 836 Antisense
TAGCACTGGTGCTCTCATTGTCAAT 49 651 867 Antisense
GATTGTCGAAGACCTTTCCCAACAC 453 431 930 Antisense
TTCCCAACACTTTGGCTCTTGCATT 67 697 945 Antisense
CAAGCATTCACGGACAGCACATCGA 327 185 1018 Antisense
ACGAGCCAACGCCGTGACAATGCGA 425 91 1062 Antisense
Sequence Source Affymetrix Proprietary Database