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Cluster Members Consensus/Exemplar Group Members |
GeneChip Array Information |
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177019_s_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.19240
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Exemplar sequence
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Y54G2A.T NCBI
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Y54G2A.T /REP_DB=WormBase Gene ID /WP=CE25462 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59580.1
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_067866(11) |
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NM_067866 NCBI |
Caenorhabditis elegans Y54G2A.18 (Y54G2A.18) mRNA, complete cds. |
11/11 |
None |
SNAP00000036498 ENSEMBL |
cdna:SNAP chromosome:CEL140:IV:2891682:2892485:-1 |
11/11 |
None |
GENEFINDER00000036616 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:IV:2891682:2892485:-1 |
11/11 |
None |
Y54G2A.18.2 ENSEMBL |
cdna:known chromosome:CEL140:IV:2891554:2892497:-1 gene:Y54G2A.18 |
11/11 |
None |
Y54G2A.18.1 ENSEMBL |
cdna:known chromosome:CEL140:IV:2891554:2892494:-1 gene:Y54G2A.18 |
11/11 |
None | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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|
|
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chrIV:2891687-2892491(-) |
100.0 |
100.0 |
| |
Public Domain and Genome References |
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Y54G2A.18
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177072 Entrez gene
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Q9N3B5 EMBL-EBI
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CE25462 Wormbase
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Functional Annotations |
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|
6886 |
intracellular protein transport |
inferred from electronic annotation |
QuickGO AmiGO |
6915 |
apoptosis |
inferred from electronic annotation |
QuickGO AmiGO |
|
|
|
|
5783 |
endoplasmic reticulum |
inferred from electronic annotation |
QuickGO AmiGO |
16021 |
integral to membrane |
inferred from electronic annotation |
QuickGO AmiGO | |
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|
|
|
|
blast |
AAF59580 |
Hypothetical protein Y54G2A.18 [Caenorhabditis elegans] ref|NP_500267.1| Y54G2A.18 [Caenorhabditis elegans] gb|AAG50233.1| 4D656 [Caenorhabditis elegans] |
1.0E-109 |
blast |
CAE67927 |
Hypothetical protein CBG13527 [Caenorhabditis briggsae] |
4.0E-92 | |
|
|
|
|
|
Pfam |
IPR008417 EMBL-EBI |
B-cell receptor-associated 31-like |
8.4E-119 |
NP_500267.1 |
3 |
5-27,47-64,100-119 |
Y54G2A.18.2 |
3 |
5-27,47-64,100-119 |
Y54G2A.18.1 |
3 |
5-27,47-64,100-119 |
SNAP00000036498 |
3 |
5-27,47-64,100-119 |
GENEFINDER00000036616 |
3 |
5-27,47-64,100-119 | |
Sequence |
|
>C. ELEGANS:177019_S_AT
cgtgctttacgcagaaatcgccatcaccttcaccctccttcttccatggatcagaccgac
tttgtggagcaagttgttcaagtcccgtctcttcacagctctcgccaaacatgctcacat
ctattcgatcacgttcggcttcgtgctcttcatcctcttcgccgacggcgttcgcgagac
aatgaagtacaacgggctcgagggacaaatgggccgtaccgccgaatccgacgccaccca
ccacatgcgtctgttccgtgcgcagagaaatctctacatttccggcttcgctcttctcct
ttggctcgtcattcagcgtattatgaccttgttgggccgcgccgcccaacttgaagccgc
cagcgaggccgcaatgcgtcaagccgaatctgctaccaagaccgccaggactttgatgaa
ctcggctgacaccaacgaagaagccgccggattggcaaagcaaatcgagaagctcaaggg
agagctcaagtccgccaacactgaccgtgacactctcaagaa
BLASTn GenBank NR |
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|
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CGTGCTTTACGCAGAAATCGCCATC |
380 |
245 |
42 |
Antisense |
CTCCTTCTTCCATGGATCAGACCGA |
282 |
235 |
76 |
Antisense |
GAGCAAGTTGTTCAAGTCCCGTCTC |
197 |
391 |
108 |
Antisense |
CTCGCCAAACATGCTCACATCTATT |
625 |
233 |
142 |
Antisense |
TCTATTCGATCACGTTCGGCTTCGT |
369 |
613 |
161 |
Antisense |
TCTTCGCCGACGGCGTTCGCGAGAC |
702 |
617 |
197 |
Antisense |
TCGAGGGACAAATGGGCCGTACCGC |
110 |
561 |
239 |
Antisense |
CTTTGGCTCGTCATTCAGCGTATTA |
674 |
223 |
340 |
Antisense |
CCAGCGAGGCCGCAATGCGTCAAGC |
264 |
273 |
401 |
Antisense |
TGCGTCAAGCCGAATCTGCTACCAA |
552 |
583 |
416 |
Antisense |
ACACTGACCGTGACACTCTCAAGAA |
310 |
111 |
539 |
Antisense | |
|
Affymetrix Proprietary Database |