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[177016_at]

Description Y48G1A.G /REP_DB=WormBase Gene ID /WP=CE22163 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60685.1
Cluster 6grp_total > 88      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 6.7
(-3)
A 		24.6
(-2.1)
A 		10.7
(-2.8)
A 		132.3
(3)
P 		126
B 6.3
(-2.7)
A 		14
(-1.7)
A 		3.6
(-3)
A 		50.5
(3)
A 		47
C 7.5
(-3)
A 		30.5
(-1.5)
A 		15.3
(-2.5)
A 		97.9
(3)
P 		90
avr 6.8
(-3) 		23
(-1.9) 		9.9
(-2.8) 		93.6
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 17.9
(-2.8)
A 		10.9
(-3)
A 		32.1
(-2.5)
A 		61
(-1.9)
P 		152.5
(0.2)
P 		274.6
(3)
P 		264
B 10.6
(-3)
A 		11
(-3)
A 		19.1
(-2.8)
A 		35.2
(-2.4)
A 		151.6
(0.4)
P 		257.7
(3)
P 		247
C 17.1
(-2.9)
A 		10.7
(-3)
A 		51.8
(-2.2)
A 		14.1
(-2.9)
A 		176.7
(0.2)
P 		319.5
(3)
P 		309
avr 15.2
(-2.9) 		10.9
(-3) 		34.3
(-2.5) 		36.8
(-2.4) 		160.3
(0.3) 		283.9
(3) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.4
(-3)
A 		5.3
(-2)
A 		2.8
(-2.9)
A 		19.4
(3)
P 		17
B 2
(-2.3)
A 		3.5
(-1.4)
A 		0.8
(-3)
A 		10.8
(3)
A 		10
C 2.5
(-3)
A 		8.8
(-0.3)
A 		5.3
(-1.8)
A 		16.5
(3)
P 		14
avr 2.3
(-3) 		5.9
(-1.4) 		3
(-2.7) 		15.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 3.3
(-3)
A 		3.9
(-2.9)
A 		7
(-2.7)
A 		15.5
(-1.8)
P 		46
(1)
P 		66.8
(3)
P 		64
B 3.7
(-3)
A 		3.6
(-3)
A 		4.6
(-2.9)
A 		9.3
(-2.6)
A 		61.6
(0.8)
P 		96.1
(3)
P 		93
C 6.3
(-2.8)
A 		3.3
(-3)
A 		13.2
(-2.4)
A 		2.8
(-3)
A 		57.2
(0.1)
P 		107
(3)
P 		104
avr 4.4
(-2.9) 		3.6
(-3) 		8.3
(-2.7) 		9.2
(-2.6) 		54.9
(0.6) 		90
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18856
Sequence Type Exemplar sequence
Representative Public ID Y48G1A.G NCBI
Target Description Y48G1A.G /REP_DB=WormBase Gene ID /WP=CE22163 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60685.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058320(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058320 NCBI Caenorhabditis elegans Y48G1A.2 (Y48G1A.2) mRNA, complete cds. 10/11 None
SNAP00000006800 ENSEMBL cdna:SNAP chromosome:CEL140:I:341725:348152:1 11/11 None
GENEFINDER00000006807 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:347210:348152:1 10/11 None
Y48G1A.2 ENSEMBL cdna:known chromosome:CEL140:I:347497:348334:1 gene:Y48G1A.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:345856-348152(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1A.2
Entrez Gene 171625 Entrez gene
SwissProt Q9N3Q6 EMBL-EBI
WormBase CE26998 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60685 Hypothetical protein Y48G1A.2 [Caenorhabditis elegans] ref|NP_490721.1| Y48G1A.2 [Caenorhabditis elegans] 2.0E-61
blast AAF60685 Hypothetical protein Y48G1A.2 [Caenorhabditis elegans] ref|NP_490721.1| Y48G1A.2 [Caenorhabditis elegans] 1.0E-44
blast AAF60685 Hypothetical protein Y48G1A.2 [Caenorhabditis elegans] ref|NP_490721.1| Y48G1A.2 [Caenorhabditis elegans] 3.0E-44
blast CAE61276 Hypothetical protein CBG05095 [Caenorhabditis briggsae] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:177016_AT
gtgtgattttccaagagccgtagctcgaccagacgacggagagcctgaggctggtcgcca
gaagcactatgaaccaccccacaccgtccacgaacaaactccgaatcgaagctcggggct
cgcgagcagcttctccgggactctatacgagtggcttcaagtagcttcggagccgtacgt
ccacatgacaaaggaatccacgtgggacgaggcgaaaaaactggcgatcagtcttgaaaa
gaagccggacattgtccgtaaagcgatatacaatcgtcgtcgcttcgtcaatgaaaagat
aaaaagtgcgctggtcaagcgcgaaatcatcgacccaagaagcccggcaatccatgaaat
agcagtggcggcggagacaatcgccataaacgttgtgcacttcttggagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGATTTTCCAAGAGCCGTAGCT 49 489 123 Antisense
CGTAGCTCGACCAGACGACGGAGAG 690 243 141 Antisense
GACGGAGAGCCTGAGGCTGGTCGCC 540 197 157 Antisense
GTCGCCAGAAGCACTATGAACCACC 467 475 176 Antisense
GAATCGAAGCTCGGGGCTCGCGAGC 450 327 225 Antisense
GCTTCAAGTAGCTTCGGAGCCGTAC 253 303 276 Antisense
GAGCCGTACGTCCACATGACAAAGG 108 385 292 Antisense
TATACAATCGTCGTCGCTTCGTCAA 548 657 389 Antisense
GTCAAGCGCGAAATCATCGACCCAA 668 463 436 Antisense
GAAGCCCGGCAATCCATGAAATAGC 228 345 461 Antisense
AAACGTTGTGCACTTCTTGGAGACT 138 127 510 Antisense
Sequence Source Affymetrix Proprietary Database