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[177013_at]

Description Y54G2A.C /REP_DB=WormBase Gene ID /WP=CE25445 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59563.1
Cluster 6grp_total > 17      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 93.3
(3)
P 		50
(-2.4)
A 		44.8
(-3)
A 		62.7
(-0.8)
A 		49
B 66
(3)
A 		42.2
(-1.6)
A 		41.5
(-1.7)
A 		35
(-3)
A 		31
C 73.8
(1.6)
M 		56.2
(0.1)
A 		20.2
(-3)
A 		90.7
(3)
A 		71
avr 77.7
(3) 		49.5
(-1) 		35.5
(-3) 		62.8
(0.9) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 84.1
(3)
A 		74.3
(1.7)
A 		64.2
(0.5)
A 		37.2
(-3)
A 		51.1
(-1.2)
A 		53.8
(-0.9)
P 		47
B 78.9
(3)
P 		33
(-1.2)
A 		12.6
(-3)
A 		48.3
(0.2)
A 		39.6
(-0.6)
A 		43.5
(-0.2)
M 		66
C 37
(-3)
A 		47.5
(-1.5)
A 		79.9
(3)
A 		48
(-1.5)
A 		43.6
(-2.1)
A 		64.3
(0.8)
A 		43
avr 66.7
(3) 		51.6
(-1.1) 		52.2
(-0.9) 		44.5
(-3) 		44.8
(-2.9) 		53.9
(-0.5) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 34
(3)
P 		10.9
(-2.6)
A 		11.7
(-2.4)
A 		9.2
(-3)
A 		25
B 21.1
(3)
A 		10.4
(-1.7)
A 		9.6
(-2.1)
A 		7.5
(-3)
A 		14
C 24.4
(3)
M 		16.2
(0.2)
A 		7
(-3)
A 		15.3
(-0.1)
A 		17
avr 26.5
(3) 		12.5
(-1.9) 		9.4
(-3) 		10.7
(-2.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 15.5
(-0.8)
A 		26.4
(3)
A 		14
(-1.4)
A 		9.4
(-3)
A 		15.4
(-0.9)
A 		13.1
(-1.7)
P 		17
B 27.5
(3)
P 		11
(-1.1)
A 		3.1
(-3)
A 		12.8
(-0.6)
A 		16.1
(0.2)
A 		16.2
(0.2)
M 		24
C 13.7
(-0.9)
A 		14.5
(-0.5)
A 		20.3
(2.4)
A 		9.6
(-3)
A 		14.1
(-0.7)
A 		21.5
(3)
A 		12
avr 18.9
(3) 		17.3
(1.8) 		12.5
(-1.6) 		10.6
(-3) 		15.2
(0.3) 		16.9
(1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19273
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.C NCBI
Target Description Y54G2A.C /REP_DB=WormBase Gene ID /WP=CE25445 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59563.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067878
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000036613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2986606:3011196:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067878 4/11 Cross Hyb Matching Probes None
SNAP00000036519 1/11 Cross Hyb Matching Probes None
Y54G2A.28 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3001264-3011202(-) 82.26 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59568 Hypothetical protein Y54G2A.26a [Caenorhabditis elegans] ref|NP_001023499.1| Y54G2A.26a [Caenorhabditis elegans] 0.0
blast AAP13744 Hypothetical protein Y54G2A.26b [Caenorhabditis elegans] ref|NP_001023500.1| Y54G2A.26b [Caenorhabditis elegans] 0.0
blast CAE59877 Hypothetical protein CBG03357 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177013_AT
agcgtcaaaatcactaacatcttcgacgagtgctgctttttctacatctacctacggatc
gaatggttgtttcaattttcaaactgaattcgaagaaaatgctgatgatgggcatgatgc
tgagcactgcttcatcaagaacgacgaacgacagagccatcaagacgagatagtaccgaa
cgccggagacgcagacattttggatgatggcaaagagacggagaagaagaagacgaagct
gatggaaaacggagagaccgaagaagttgcggagctggatgagaaaaatgaagatgatga
cgagattgccgttatagacgaggtgagagagagagagagacactgcaactttttcctcac
gagggacgaggaaaagtggtttctaggccatggccgaggggccgacaagtttcagcggcc
atttatcttgctttgttttccgcctgttttcttttgtttttcatcgattttttccatgct
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGTCAAAATCACTAACATCTTCG 594 81 1119 Antisense
AACATCTTCGACGAGTGCTGCTTTT 626 137 1134 Antisense
CGACGAGTGCTGCTTTTTCTACATC 662 251 1142 Antisense
TTTCTACATCTACCTACGGATCGAA 603 671 1157 Antisense
GGGCATGATGCTGAGCACTGCTTCA 504 493 1228 Antisense
AGCACTGCTTCATCAAGAACGACGA 222 75 1241 Antisense
GAACGACGAACGACAGAGCCATCAA 433 347 1257 Antisense
AGACGAGATAGTACCGAACGCCGGA 104 71 1281 Antisense
GAACGCCGGAGACGCAGACATTTTG 450 347 1296 Antisense
GATGACGAGATTGCCGTTATAGACG 654 411 1414 Antisense
TTTCATCGATTTTTTCCATGCTAAA 269 673 1577 Antisense
Sequence Source Affymetrix Proprietary Database