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[177012_at]

Description Y67D8C.F /REP_DB=WormBase Gene ID /WP=CE22778 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23374.1
Cluster 6grp_total > 75      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 32.2
(0.8)
A 		13
(-1.7)
A 		3.6
(-3)
A 		48.4
(3)
A 		45
B 5.6
(-2.5)
A 		2.2
(-3)
A 		24.6
(0.3)
A 		42.9
(3)
P 		41
C 17.1
(-2)
A 		1.9
(-3)
A 		7.6
(-2.6)
A 		90.1
(3)
P 		88
avr 18.3
(-1.6) 		5.7
(-3) 		11.9
(-2.3) 		60.5
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.5
(-2.6)
A 		2.1
(-2.9)
A 		1.6
(-3)
A 		3
(-2.7)
A 		3.6
(-2.6)
A 		30.9
(3)
A 		29
B 3
(-2.6)
A 		1.7
(-3)
A 		11.7
(0.1)
A 		21.2
(3)
A 		4.8
(-2)
A 		12.6
(0.4)
A 		20
C 4.1
(-0.4)
A 		4.3
(-0.2)
A 		3.2
(-1.3)
A 		7.4
(3)
A 		6.3
(1.9)
A 		1.6
(-3)
A 		6
avr 3.5
(-2.6) 		2.7
(-3) 		5.5
(-1.6) 		10.5
(0.8) 		4.9
(-1.9) 		15
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.7
(3)
A 		2.8
(-1.9)
A 		0.9
(-3)
A 		7.1
(0.4)
A 		11
B 1.8
(-2.1)
A 		0.5
(-3)
A 		5.7
(0.6)
A 		9.1
(3)
P 		9
C 5.7
(-0.9)
A 		0.6
(-3)
A 		2.7
(-2.1)
A 		15.2
(3)
P 		15
avr 6.4
(0.3) 		1.3
(-3) 		3.1
(-1.8) 		10.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		0.8
(-2.6)
A 		0.3
(-3)
A 		0.8
(-2.6)
A 		1.1
(-2.3)
A 		7.5
(3)
A 		7
B 1
(-2.5)
A 		0.6
(-3)
A 		2.8
(-0.4)
A 		5.6
(3)
A 		1.9
(-1.4)
A 		4.7
(1.9)
A 		5
C 1.5
(1)
A 		1.3
(0.2)
A 		0.8
(-1.8)
A 		1.5
(1)
A 		2
(3)
A 		0.5
(-3)
A 		2
avr 1
(-2.8) 		0.9
(-3) 		1.3
(-2.3) 		2.6
(0.1) 		1.7
(-1.5) 		4.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19291
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.F NCBI
Target Description Y67D8C.F /REP_DB=WormBase Gene ID /WP=CE22778 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23374.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067886 NCBI Caenorhabditis elegans Y67D8C.6 (Y67D8C.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000001626 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3062520:3065375:-1 11/11 None
Y67D8C.6 ENSEMBL cdna:known chromosome:CEL140:IV:3062520:3063362:-1 gene:Y67D8C.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001611 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3062525-3063368(-) 94.84 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.6
Entrez Gene 190520 Entrez gene
SwissProt Q9GUN7 EMBL-EBI
WormBase CE22778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23374 Hypothetical protein Y67D8C.6 [Caenorhabditis elegans] ref|NP_500287.1| Y67D8C.6 [Caenorhabditis elegans] 1.0E-124
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 2.0E-30
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 1.0E-29
blast AAF60628 Hypothetical protein Y46H3C.6 [Caenorhabditis elegans] ref|NP_503485.2| Y46H3C.6 [Caenorhabditis elegans] 5.0E-16
blast AAF60628 Hypothetical protein Y46H3C.6 [Caenorhabditis elegans] ref|NP_503485.2| Y46H3C.6 [Caenorhabditis elegans] 1.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500287.1 1 241-263
Y67D8C.6 1 241-263
GENEFINDER00000001626 1 353-375
Sequence
Target Sequence 
>C. ELEGANS:177012_AT
gaatcagcagagtacctcgcaatgccgttcaaatcacaaacgcaaggcaaattggtggtt
ttttgcgtctccagtgatgcctcggcggcggtgatctcttcgaaaattgaagaagccaac
tggatgagcctattcggcctcaaacccccttcctttggtggattcgcaaggagttggacg
cgtcaccttgattacgcggaagcggaaatttatccgcatttgttttataattttgaaatt
aattatttaattatttttaaattgacaagttttatctataaaaatgttaccattgtttcc
atcattttgctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAGCAGAGTACCTCGCAATGC 654 327 463 Antisense
CTCGCAATGCCGTTCAAATCACAAA 525 233 478 Antisense
ATTGGTGGTTTTTTGCGTCTCCAGT 303 3 513 Antisense
CGGCGGTGATCTCTTCGAAAATTGA 38 241 548 Antisense
GAAGCCAACTGGATGAGCCTATTCG 158 345 574 Antisense
TGGATGAGCCTATTCGGCCTCAAAC 413 547 583 Antisense
CCCTTCCTTTGGTGGATTCGCAAGG 132 1 609 Antisense
TCGCAAGGAGTTGGACGCGTCACCT 304 601 626 Antisense
GTCACCTTGATTACGCGGAAGCGGA 627 465 644 Antisense
GGAAATTTATCCGCATTTGTTTTAT 551 525 666 Antisense
ACCATTGTTTCCATCATTTTGCTCG 353 87 751 Antisense
Sequence Source Affymetrix Proprietary Database