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[177010_at]

Description Y94H6A.H /REP_DB=WormBase Gene ID /WP=CE25635 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60894.1
Cluster 6grp_total > 59      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 205.9
(-0.6)
A 		225.4
(0.3)
A 		159.7
(-3)
A 		277.4
(3)
A 		118
B 228.3
(0.8)
A 		100.5
(-1.9)
A 		44.8
(-3)
A 		336.6
(3)
A 		292
C 161.8
(-2.3)
A 		186.5
(-1.6)
A 		140.8
(-3)
A 		331.4
(3)
P 		191
avr 198.7
(-0.5) 		170.8
(-1.3) 		115.1
(-3) 		315.1
(3) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 237
(1.7)
A 		175.2
(-2.9)
A 		173.2
(-3)
A 		218
(0.3)
A 		249
(2.6)
P 		255
(3)
P 		82
B 215.8
(0.3)
M 		169.8
(-1.9)
A 		196.9
(-0.6)
A 		146.2
(-3)
A 		234.5
(1.2)
P 		272.9
(3)
P 		127
C 188.3
(-0.7)
A 		182
(-1)
A 		138.4
(-3)
A 		269.4
(3)
M 		193.9
(-0.5)
P 		244.9
(1.9)
P 		131
avr 213.7
(0) 		175.7
(-2.6) 		169.5
(-3) 		211.2
(-0.2) 		225.8
(0.8) 		257.6
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 75
(3)
A 		48.9
(-1.6)
A 		41.7
(-2.8)
A 		40.6
(-3)
A 		34
B 72.8
(3)
A 		24.8
(-1.6)
A 		10.4
(-3)
A 		71.7
(2.9)
A 		62
C 53.6
(1)
A 		53.6
(1)
A 		49.1
(-3)
A 		55.9
(3)
P 		7
avr 67.1
(3) 		42.4
(-1.4) 		33.7
(-3) 		56.1
(1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 43.7
(-2)
A 		62.3
(0.9)
A 		37.7
(-3)
A 		55.3
(-0.2)
A 		75.1
(3)
P 		62.1
(0.9)
P 		37
B 75.1
(0.5)
M 		56.5
(-1.3)
A 		47.8
(-2.1)
A 		38.7
(-3)
A 		95.3
(2.4)
P 		101.8
(3)
P 		63
C 69.8
(1.4)
A 		55.5
(-0.4)
A 		35.2
(-3)
A 		54.2
(-0.6)
M 		62.7
(0.5)
P 		82
(3)
P 		47
avr 62.9
(0.3) 		58.1
(-0.4) 		40.2
(-3) 		49.4
(-1.7) 		77.7
(2.4) 		82
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19145
Sequence Type Exemplar sequence
Representative Public ID Y94H6A.H NCBI
Target Description Y94H6A.H /REP_DB=WormBase Gene ID /WP=CE25635 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60894.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067842 NCBI Caenorhabditis elegans Y94H6A.3 (Y94H6A.3) mRNA, complete cds. 11/11 None
SNAP00000003278 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2676550:2680279:1 9/11 None
Y94H6A.3 ENSEMBL cdna:known chromosome:CEL140:IV:2676510:2678145:1 gene:Y94H6A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003288 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2675220-2678108(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y94H6A.3
Entrez Gene 177052 Entrez gene
SwissProt Q9N2X1 EMBL-EBI
WormBase CE27552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60894 Hypothetical protein Y94H6A.3 [Caenorhabditis elegans] ref|NP_500243.1| Y94H6A.3 [Caenorhabditis elegans] 3.0E-71
blast AAF60894 Hypothetical protein Y94H6A.3 [Caenorhabditis elegans] ref|NP_500243.1| Y94H6A.3 [Caenorhabditis elegans] 2.0E-53
blast CAE73912 Hypothetical protein CBG21521 [Caenorhabditis briggsae] 3.0E-44
blast CAE73912 Hypothetical protein CBG21521 [Caenorhabditis briggsae] 5.0E-32
Sequence
Target Sequence 
>C. ELEGANS:177010_AT
aatctttctccgacaaaaatgcctcgttctcctaacaaatatgatcgagaccgccgtgac
cgcgatcgggaccgccatcgatcgaataaagatcattcaagtgacgtcgccagaatgaag
gaaaagatgcggagcacactggagagtgcgagaaaatccgatgctccctccacgtcatcg
gatttttcgagaaaaccgcaaaaagtcgaggaactgacgccggccgagcatttggccagg
acacgggctatcgaggagattgaggaggccggttttcagccaggaagcttcagatccggc
tcagcggcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTTCTCCGACAAAAATGCCTC 344 167 307 Antisense
AATGCCTCGTTCTCCTAACAAATAT 210 167 324 Antisense
AAATATGATCGAGACCGCCGTGACC 630 113 343 Antisense
GATCGGGACCGCCATCGATCGAATA 160 417 370 Antisense
AGATCATTCAAGTGACGTCGCCAGA 80 67 396 Antisense
TGCGAGAAAATCCGATGCTCCCTCC 419 583 453 Antisense
CCTCCACGTCATCGGATTTTTCGAG 464 267 473 Antisense
GCCGGCCGAGCATTTGGCCAGGACA 594 283 525 Antisense
GGCCAGGACACGGGCTATCGAGGAG 426 543 540 Antisense
GGCCGGTTTTCAGCCAGGAAGCTTC 503 537 573 Antisense
CTTCAGATCCGGCTCAGCGGCAAAG 285 221 594 Antisense
Sequence Source Affymetrix Proprietary Database